Aliases for CCDC163 Gene

Aliases for CCDC163 Gene

  • Coiled-Coil Domain Containing 163 2 3 5
  • Coiled-Coil Domain Containing 163, Pseudogene 2 3
  • Coiled-Coil Domain-Containing Protein 163 3 4
  • Transmembrane Protein CCDC163 3 4
  • C1orf231 3 4
  • CCDC163P 3 4
  • Coiled-Coil Domain Containing 163 Pseudogene 4
  • Chromosome 1 Open Reading Frame 231 2
  • LOC126661 2
  • CCDC163 5

External Ids for CCDC163 Gene

Previous HGNC Symbols for CCDC163 Gene

  • C1orf231
  • CCDC163P

Summaries for CCDC163 Gene

GeneCards Summary for CCDC163 Gene

CCDC163 (Coiled-Coil Domain Containing 163) is a Protein Coding gene.

Additional gene information for CCDC163 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CCDC163 Gene

Genomics for CCDC163 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CCDC163 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CCDC163 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CCDC163 Gene

Genomic Locations for CCDC163 Gene
chr1:45,493,863-45,500,111
(GRCh38/hg38)
Size:
6,249 bases
Orientation:
Minus strand
chr1:45,959,538-45,965,751
(GRCh37/hg19)
Size:
6,214 bases
Orientation:
Minus strand

Genomic View for CCDC163 Gene

Genes around CCDC163 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC163 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC163 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC163 Gene

Proteins for CCDC163 Gene

  • Protein details for CCDC163 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0A0D9SF12-CC163_HUMAN
    Recommended name:
    Transmembrane protein CCDC163
    Protein Accession:
    A0A0D9SF12

    Protein attributes for CCDC163 Gene

    Size:
    145 amino acids
    Molecular mass:
    16203 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCDC163 Gene

Post-translational modifications for CCDC163 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCDC163 Gene

Domains & Families for CCDC163 Gene

Gene Families for CCDC163 Gene

Human Protein Atlas (HPA):
  • Predicted membrane proteins

Protein Domains for CCDC163 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with CCDC163: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CCDC163 Gene

Function for CCDC163 Gene

Phenotypes From GWAS Catalog for CCDC163 Gene

genes like me logo Genes that share phenotypes with CCDC163: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC163 Gene

Localization for CCDC163 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CCDC163 Gene

Membrane. Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for CCDC163 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with CCDC163: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for CCDC163 Gene

Pathways & Interactions for CCDC163 Gene

PathCards logo

SuperPathways for CCDC163 Gene

No Data Available

Interacting Proteins for CCDC163 Gene

Gene Ontology (GO) - Biological Process for CCDC163 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC163 Gene

Drugs & Compounds for CCDC163 Gene

No Compound Related Data Available

Transcripts for CCDC163 Gene

mRNA/cDNA for CCDC163 Gene

3 REFSEQ mRNAs :
11 NCBI additional mRNA sequence :
8 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC163 Gene

No ASD Table

Relevant External Links for CCDC163 Gene

GeneLoc Exon Structure for
CCDC163

Expression for CCDC163 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CCDC163

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC163 Gene

Orthologs for CCDC163 Gene

Evolution for CCDC163 Gene

ENSEMBL:
Gene Tree for CCDC163 (if available)
TreeFam:
Gene Tree for CCDC163 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for CCDC163: view image

No data available for Orthologs for CCDC163 Gene

Paralogs for CCDC163 Gene

No data available for Paralogs for CCDC163 Gene

Variants for CCDC163 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for CCDC163 Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
684370 Benign: not provided 45,500,031(-) G/T NON_CODING_TRANSCRIPT_VARIANT,FIVE_PRIME_UTR_VARIANT

Additional dbSNP identifiers (rs#s) for CCDC163 Gene

Structural Variations from Database of Genomic Variants (DGV) for CCDC163 Gene

Variant ID Type Subtype PubMed ID
esv1477203 CNV insertion 17803354
esv1741401 CNV insertion 17803354
esv2747808 CNV deletion 23290073
esv3893512 CNV gain 25118596
nsv829726 CNV loss 17160897

Variation tolerance for CCDC163 Gene

Gene Damage Index Score: 5.78; 73.57% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for CCDC163 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC163

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC163 Gene

Disorders for CCDC163 Gene

Additional Disease Information for CCDC163

No disorders were found for CCDC163 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC163 Gene

Publications for CCDC163 Gene

  1. Comparative analysis of an unusual gene arrangement in the human chromosome 1. (PMID: 18672041) Makałowska I (Gene 2008) 2 3
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for CCDC163 Gene

Sources for CCDC163 Gene