CCDC162P Gene (Pseudogene)

Coiled-Coil Domain Containing 162, Pseudogene

GC06P109166
GIFtS:
18
This gene is the ortholog of the mouse coiled-coil domain containing 162 gene. This locus is transcribed, but is represented as a unitary pseudogene because there are multiple changes in the coding sequence, including multiple changes that result in premature stop codons, relative to the mouse coding sequence. Transcripts from this locus are expected to encode truncated protein... See more...

Aliases for CCDC162P Gene

Aliases for CCDC162P Gene

  • Coiled-Coil Domain Containing 162, Pseudogene 2 3 5
  • Chromosome 6 Open Reading Frame 184 2
  • Chromosome 6 Open Reading Frame 185 2
  • Chromosome 6 Open Reading Frame 183 2
  • BA425D10.7 2
  • BA425D10.3 2
  • BA487F23.3 2
  • C6orf183 3
  • C6orf184 3
  • C6orf185 3
  • CCDC162P 5
  • CCDC162 3

External Ids for CCDC162P Gene

Previous HGNC Symbols for CCDC162P Gene

  • C6orf184
  • C6orf185
  • CCDC162
  • C6orf183

Previous GeneCards Identifiers for CCDC162P Gene

  • GC06P109613
  • GC06P109285
  • GC06P109167

Summaries for CCDC162P Gene

Entrez Gene Summary for CCDC162P Gene

  • This gene is the ortholog of the mouse coiled-coil domain containing 162 gene. This locus is transcribed, but is represented as a unitary pseudogene because there are multiple changes in the coding sequence, including multiple changes that result in premature stop codons, relative to the mouse coding sequence. Transcripts from this locus are expected to encode truncated proteins, and may be candidates for nonsense-mediated decay (NMD). [provided by RefSeq, Sep 2018]

GeneCards Summary for CCDC162P Gene

CCDC162P (Coiled-Coil Domain Containing 162, Pseudogene) is a Pseudogene.

Additional gene information for CCDC162P Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CCDC162P Gene

Genomics for CCDC162P Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for CCDC162P Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CCDC162P on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for CCDC162P

Genomic Locations for CCDC162P Gene

Genomic Locations for CCDC162P Gene
chr6:109,165,831-109,355,063
(GRCh38/hg38)
Size:
189,233 bases
Orientation:
Plus strand
chr6:109,612,231-109,676,266
(GRCh37/hg19)
Size:
64,036 bases
Orientation:
Plus strand

Genomic View for CCDC162P Gene

Genes around CCDC162P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC162P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC162P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for CCDC162P Gene

Proteins for CCDC162P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Protein Expression for CCDC162P Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for CCDC162P Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCDC162P Gene

Domains & Families for CCDC162P Gene

Suggested Antigen Peptide Sequences for CCDC162P Gene

GenScript: Design optimal peptide antigens:
  • Coiled-coil domain-containing protein 162 pseudogene (CC162_HUMAN)

No data available for Gene Families , Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CCDC162P Gene

Function for CCDC162P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for CCDC162P Gene

genes like me logo Genes that share phenotypes with CCDC162P: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC162P Gene

Localization for CCDC162P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCDC162P Gene

Pathways & Interactions for CCDC162P Gene

PathCards logo

SuperPathways for CCDC162P Gene

No Data Available

Gene Ontology (GO) - Biological Process for CCDC162P Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CCDC162P Gene

Drugs & Compounds for CCDC162P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for CCDC162P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for CCDC162P Gene

2 REFSEQ mRNAs :
10 NCBI additional mRNA sequence :
15 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC162P Gene

No ASD Table

Relevant External Links for CCDC162P Gene

GeneLoc Exon Structure for
CCDC162P

Expression for CCDC162P Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CCDC162P Gene

mRNA expression in normal human tissues for CCDC162P Gene
mRNA expression by GTEx for CCDC162P Gene

mRNA differential expression in normal tissues according to GTEx for CCDC162P Gene

This gene is overexpressed in Testis (x5.1) and Liver (x4.1).

Protein differential expression in normal tissues from HIPED for CCDC162P Gene

This gene is overexpressed in Breast (57.1) and Neutrophil (10.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for CCDC162P Gene



Protein tissue co-expression partners for CCDC162P Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CCDC162P

SOURCE GeneReport for Unigene cluster for CCDC162P Gene:

Hs.373914
genes like me logo Genes that share expression patterns with CCDC162P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC162P Gene

Orthologs for CCDC162P Gene

Evolution for CCDC162P Gene

ENSEMBL:
Gene Tree for CCDC162P (if available)
TreeFam:
Gene Tree for CCDC162P (if available)

No data available for Orthologs for CCDC162P Gene

Paralogs for CCDC162P Gene

No data available for Paralogs for CCDC162P Gene

Variants for CCDC162P Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Structural Variations from Database of Genomic Variants (DGV) for CCDC162P Gene

Variant ID Type Subtype PubMed ID
nsv527719 CNV loss 19592680

Additional Variant Information for CCDC162P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC162P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for CCDC162P Gene

Disorders for CCDC162P Gene

Additional Disease Information for CCDC162P

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform

No disorders were found for CCDC162P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC162P Gene

Publications for CCDC162P Gene

  1. Seventy-five genetic loci influencing the human red blood cell. (PMID: 23222517) van der Harst P … Chambers JC (Nature 2012) 3
  2. Genome-wide association study of hematological and biochemical traits in a Japanese population. (PMID: 20139978) Kamatani Y … Kamatani N (Nature genetics 2010) 3
  3. Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium. (PMID: 19862010) Ganesh SK … Lin JP (Nature genetics 2009) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3

ExternalLinks

View latest publications for CCDC162P gene in Mastermind

Products for CCDC162P Gene

Sources for CCDC162P Gene