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Aliases for CCDC160 Gene

Aliases for CCDC160 Gene

  • Coiled-Coil Domain Containing 160 2 3 5

External Ids for CCDC160 Gene

Previous GeneCards Identifiers for CCDC160 Gene

  • GC0XP133198
  • GC0XP133371
  • GC0XP122768

Summaries for CCDC160 Gene

GeneCards Summary for CCDC160 Gene

CCDC160 (Coiled-Coil Domain Containing 160) is a Protein Coding gene.

Additional gene information for CCDC160 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC160 Gene

Genomics for CCDC160 Gene

GeneHancer (GH) Regulatory Elements for CCDC160 Gene

Promoters and enhancers for CCDC160 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI134236 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 550.8 +0.3 254 1 MAZ RFX1 SIN3A BMI1 ZNF2 ZNF335 GLIS2 ZBTB26 CCDC160 GC0XP134244
GH0XI134171 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 6.2 -63.4 -63413 4.8 MXI1 USF1 MAX ZNF76 ZIC2 ETS1 ZNF335 ZFHX2 GLIS2 PATZ1 ENSG00000283638 CCDC160 GPC3 PHF6 MIR106A GC0XM134218 GC0XM134216
GH0XI134186 Enhancer 0.4 ENCODE 12.6 -50.1 -50101 0.2 CBX8 PRDM6 BCL6B CCDC160 ENSG00000283638 LARP1BP3
GH0XI134187 Enhancer 0.4 Ensembl 12.2 -49.7 -49746 0.2 ZNF335 CBX8 CCDC160 ENSG00000283638 LARP1BP3
GH0XI133793 Enhancer 0.3 ENCODE 10.9 -442.6 -442592 1.3 FEZF1 CCDC160 RPSAP63 GC0XP133898 GC0XP133897 GPC3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CCDC160 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CCDC160 Gene

Genomic Locations for CCDC160 Gene
chrX:134,237,047-134,246,207
(GRCh38/hg38)
Size:
9,161 bases
Orientation:
Plus strand
chrX:133,371,077-133,380,237
(GRCh37/hg19)

Genomic View for CCDC160 Gene

Genes around CCDC160 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC160 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC160 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC160 Gene

Proteins for CCDC160 Gene

  • Protein details for CCDC160 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NGH7-CC160_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 160
    Protein Accession:
    A6NGH7

    Protein attributes for CCDC160 Gene

    Size:
    325 amino acids
    Molecular mass:
    38277 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCDC160 Gene

Post-translational modifications for CCDC160 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC160 Gene

No data available for DME Specific Peptides for CCDC160 Gene

Domains & Families for CCDC160 Gene

Gene Families for CCDC160 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for CCDC160 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CCDC160 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A6NGH7

UniProtKB/Swiss-Prot:

CC160_HUMAN :
  • Belongs to the CCDC160 family.
Family:
  • Belongs to the CCDC160 family.
genes like me logo Genes that share domains with CCDC160: view

Function for CCDC160 Gene

Phenotypes From GWAS Catalog for CCDC160 Gene

Phenotypes for CCDC160 Gene

genes like me logo Genes that share phenotypes with CCDC160: view

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CCDC160 Gene

Localization for CCDC160 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CCDC160 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCDC160 Gene

Pathways & Interactions for CCDC160 Gene

SuperPathways for CCDC160 Gene

No Data Available

Interacting Proteins for CCDC160 Gene

Gene Ontology (GO) - Biological Process for CCDC160 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC160 Gene

Drugs & Compounds for CCDC160 Gene

No Compound Related Data Available

Transcripts for CCDC160 Gene

mRNA/cDNA for CCDC160 Gene

(4) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCDC160 Gene

Coiled-coil domain containing 160:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC160 Gene

No ASD Table

Relevant External Links for CCDC160 Gene

GeneLoc Exon Structure for
CCDC160
ECgene alternative splicing isoforms for
CCDC160

Expression for CCDC160 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCDC160 Gene

mRNA differential expression in normal tissues according to GTEx for CCDC160 Gene

This gene is overexpressed in Brain - Substantia nigra (x4.5).

NURSA nuclear receptor signaling pathways regulating expression of CCDC160 Gene:

CCDC160

SOURCE GeneReport for Unigene cluster for CCDC160 Gene:

Hs.679431
genes like me logo Genes that share expression patterns with CCDC160: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC160 Gene

Orthologs for CCDC160 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC160 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC160 33 34
  • 99.59 (n)
dog
(Canis familiaris)
Mammalia CCDC160 33 34
  • 84.31 (n)
cow
(Bos Taurus)
Mammalia CCDC160 33 34
  • 83.28 (n)
rat
(Rattus norvegicus)
Mammalia Ccdc160 33
  • 72.46 (n)
mouse
(Mus musculus)
Mammalia Ccdc160 33 16 34
  • 71.52 (n)
oppossum
(Monodelphis domestica)
Mammalia CCDC160 34
  • 52 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CCDC160 34
  • 50 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100127779 33
  • 49.12 (n)
Species where no ortholog for CCDC160 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CCDC160 Gene

ENSEMBL:
Gene Tree for CCDC160 (if available)
TreeFam:
Gene Tree for CCDC160 (if available)

Paralogs for CCDC160 Gene

No data available for Paralogs for CCDC160 Gene

Variants for CCDC160 Gene

Sequence variations from dbSNP and Humsavar for CCDC160 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1000040709 -- 134,239,483(+) G/A intron_variant
rs1000639973 -- 134,237,073(+) G/A 5_prime_UTR_variant, genic_upstream_transcript_variant, upstream_transcript_variant
rs1000644689 -- 134,244,166(+) G/A intron_variant
rs1001015074 -- 134,243,830(+) T/C intron_variant
rs1001344595 -- 134,238,257(+) C/T intron_variant

Variation tolerance for CCDC160 Gene

Gene Damage Index Score: 0.64; 13.75% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for CCDC160 Gene

Human Gene Mutation Database (HGMD)
CCDC160
SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC160

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CCDC160 Gene

Disorders for CCDC160 Gene

Additional Disease Information for CCDC160

No disorders were found for CCDC160 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC160 Gene

Publications for CCDC160 Gene

  1. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross MT … Bentley DR (Nature 2005) 3 4 58
  2. Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries. (PMID: 24556642) Zeng Z … Shaffer JR (Caries research 2014) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for CCDC160 Gene

Sources for CCDC160 Gene

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