Aliases for CCDC15-DT Gene

Subcategory (RNA class) for CCDC15-DT Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for CCDC15-DT Gene

  • CCDC15 Divergent Transcript 2 3 5
  • CCDC15-DT 2 5
  • Lnc-HEPACAM-2 165
  • HSALNG0087929 164

External Ids for CCDC15-DT Gene

Summaries for CCDC15-DT Gene

GeneCards Summary for CCDC15-DT Gene

CCDC15-DT (CCDC15 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CCDC15-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CCDC15-DT Gene

Genomics for CCDC15-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CCDC15-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J124953 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 -0.1 -143 2.4 RNF2 SP1 HNRNPL CREB1 PRDM10 REST ZNF629 TFE3 ZNF512 IKZF1 CCDC15 CCDC15-DT MSANTD2 STT3A ENSG00000254509 TMEM218 ROBO4 ROBO3 piR-55194-083 SLC37A2
GH11J124952 Enhancer 0.4 ENCODE dbSUPER 600.7 +1.2 1177 0.1 CBFA2T3 CCDC15 CCDC15-DT piR-31170 HEPACAM
GH11J124949 Enhancer 0.3 ENCODE dbSUPER 0.7 +3.2 3193 1.9 piR-31170 piR-46632 CCDC15 ENSG00000254932 CCDC15-DT HEPACAM
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CCDC15-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CCDC15-DT Gene

Genomic Locations for CCDC15-DT Gene
chr11:124,949,163-124,954,058
(GRCh38/hg38)
Size:
4,896 bases
Orientation:
Minus strand

Genomic View for CCDC15-DT Gene

Genes around CCDC15-DT on UCSC Golden Path with GeneCards custom track
CCDC15-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
CCDC15-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC15-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC15-DT Gene

Proteins for CCDC15-DT Gene

Post-translational modifications for CCDC15-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCDC15-DT Gene

Domains & Families for CCDC15-DT Gene

Gene Families for CCDC15-DT Gene

genes like me logo Genes that share domains with CCDC15-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CCDC15-DT Gene

Function for CCDC15-DT Gene

Phenotypes From GWAS Catalog for CCDC15-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC15-DT Gene

Localization for CCDC15-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCDC15-DT Gene

Pathways & Interactions for CCDC15-DT Gene

PathCards logo

SuperPathways for CCDC15-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for CCDC15-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CCDC15-DT Gene

Drugs & Compounds for CCDC15-DT Gene

No Compound Related Data Available

Transcripts for CCDC15-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CCDC15-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000EF2274_9606 lncRNA 2209 2

HGNC: 54193,

Ensembl: ENST00000667169 (view in UCSC) ,

URS0000EF357A_9606 lncRNA 2052 1

Ensembl: ENST00000655771 (view in UCSC) ,

URS0000DB94B4_9606 lncRNA 952 1

Ensembl: ENST00000649496 (view in UCSC) ,

URS0000D5ACB7_9606 lncRNA 2738 2

LncBook: HSALNT0182795,

LNCipedia: lnc-HEPACAM-2:7,

URS0000D5C376_9606 lncRNA 2556 2

LncBook: HSALNT0182794,

LNCipedia: lnc-HEPACAM-2:6,

CCDC15-DT in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC15-DT Gene

No ASD Table

Relevant External Links for CCDC15-DT Gene

GeneLoc Exon Structure for
CCDC15-DT

No data available for mRNA/cDNA for CCDC15-DT Gene

Expression for CCDC15-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC15-DT Gene

Orthologs for CCDC15-DT Gene

Evolution for CCDC15-DT Gene

ENSEMBL:
Gene Tree for CCDC15-DT (if available)
TreeFam:
Gene Tree for CCDC15-DT (if available)

No data available for Orthologs for CCDC15-DT Gene

Paralogs for CCDC15-DT Gene

No data available for Paralogs for CCDC15-DT Gene

Variants for CCDC15-DT Gene

Additional dbSNP identifiers (rs#s) for CCDC15-DT Gene

Additional Variant Information for CCDC15-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC15-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CCDC15-DT Gene

Disorders for CCDC15-DT Gene

No disorders were found for CCDC15-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CCDC15-DT Gene

Publications for CCDC15-DT Gene

No publications were found for CCDC15-DT Gene.

No data available for Mastermind for CCDC15-DT Gene

Products for CCDC15-DT Gene

Sources for CCDC15-DT Gene