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Aliases for CCDC148-AS1 Gene

Subcategory (RNA class) for CCDC148-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CCDC148-AS1 Gene

  • CCDC148 Antisense RNA 1 2 3 5
  • CCDC148 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Tmp_locus_26 3

External Ids for CCDC148-AS1 Gene

Previous GeneCards Identifiers for CCDC148-AS1 Gene

  • GC02P159024

Summaries for CCDC148-AS1 Gene

GeneCards Summary for CCDC148-AS1 Gene

CCDC148-AS1 (CCDC148 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CCDC148-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC148-AS1 Gene

Genomics for CCDC148-AS1 Gene

GeneHancer (GH) Regulatory Elements for CCDC148-AS1 Gene

Promoters and enhancers for CCDC148-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J158213 Enhancer 1.1 Ensembl ENCODE 8.5 +47.9 47861 1.4 ATF1 PKNOX1 FOXA2 ARNT ZNF133 ARID4B FEZF1 ZFP91 FOS ATF7 RN7SL393P PKP4 CCDC148 CCDC148-AS1 GC02P158160 HNRNPDLP2
GH02J158217 Enhancer 0.2 Ensembl 7 +51.3 51251 0.6 CCDC148-AS1 GC02P158160 HNRNPDLP2 CCDC148
GH02J158185 Enhancer 0.9 ENCODE 0.4 +18.5 18524 0.2 PKNOX1 FOXA2 MLX ARID4B NEUROD1 SIN3A ZNF48 ETS1 FOS SP5 RN7SL393P CCDC148 PKP4 CCDC148-AS1 GC02P158160 HNRNPDLP2
GH02J158190 Enhancer 1.1 Ensembl ENCODE 0.3 +24.7 24744 1.4 FOXA2 ARID4B YY1 SLC30A9 ATF7 RUNX3 NFKBIZ SP5 JUNB PPARG CCDC148-AS1 GC02P158160 HNRNPDLP2 CCDC148
GH02J158189 Enhancer 0.9 ENCODE 0.3 +23.1 23054 0.2 FOXA2 MLX ARID4B ETS1 SLC30A9 NFKBIZ RXRA NFYC MIER2 PPARG CCDC148-AS1 GC02P158160 HNRNPDLP2 CCDC148
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CCDC148-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CCDC148-AS1 Gene

Genomic Locations for CCDC148-AS1 Gene
chr2:158,166,650-158,236,169
(GRCh38/hg38)
Size:
69,520 bases
Orientation:
Plus strand
chr2:159,023,162-159,092,681
(GRCh37/hg19)

Genomic View for CCDC148-AS1 Gene

Genes around CCDC148-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC148-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC148-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC148-AS1 Gene

Proteins for CCDC148-AS1 Gene

Post-translational modifications for CCDC148-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCDC148-AS1 Gene

Domains & Families for CCDC148-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC148-AS1 Gene

Function for CCDC148-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC148-AS1 Gene

Localization for CCDC148-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCDC148-AS1 Gene

Pathways & Interactions for CCDC148-AS1 Gene

SuperPathways for CCDC148-AS1 Gene

No Data Available

Interacting Proteins for CCDC148-AS1 Gene

Gene Ontology (GO) - Biological Process for CCDC148-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC148-AS1 Gene

Drugs & Compounds for CCDC148-AS1 Gene

No Compound Related Data Available

Transcripts for CCDC148-AS1 Gene

mRNA/cDNA for CCDC148-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for CCDC148-AS1 Gene

CCDC148 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC148-AS1 Gene

No ASD Table

Relevant External Links for CCDC148-AS1 Gene

GeneLoc Exon Structure for
CCDC148-AS1
ECgene alternative splicing isoforms for
CCDC148-AS1

Expression for CCDC148-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCDC148-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CCDC148-AS1 Gene

This gene is overexpressed in Testis (x49.7).

SOURCE GeneReport for Unigene cluster for CCDC148-AS1 Gene:

Hs.570262
genes like me logo Genes that share expression patterns with CCDC148-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC148-AS1 Gene

Orthologs for CCDC148-AS1 Gene

Evolution for CCDC148-AS1 Gene

ENSEMBL:
Gene Tree for CCDC148-AS1 (if available)
TreeFam:
Gene Tree for CCDC148-AS1 (if available)

No data available for Orthologs for CCDC148-AS1 Gene

Paralogs for CCDC148-AS1 Gene

No data available for Paralogs for CCDC148-AS1 Gene

Variants for CCDC148-AS1 Gene

Sequence variations from dbSNP and Humsavar for CCDC148-AS1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000060742 -- 158,209,608(+) C/T intron_variant
rs1000078596 -- 158,203,674(+) C/G intron_variant
rs1000089769 -- 158,233,437(+) T/A intron_variant
rs1000099076 -- 158,208,978(+) T/C intron_variant
rs1000100085 -- 158,202,401(+) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC148-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2721019 CNV deletion 23290073
nsv1005075 CNV loss 25217958
nsv583440 CNV loss 21841781

Additional Variant Information for CCDC148-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC148-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCDC148-AS1 Gene

Disorders for CCDC148-AS1 Gene

Additional Disease Information for CCDC148-AS1

No disorders were found for CCDC148-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC148-AS1 Gene

Publications for CCDC148-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for CCDC148-AS1 Gene

Sources for CCDC148-AS1 Gene

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