Aliases for CCDC144NL-AS1 Gene

Data sources for CCDC144NL-AS1 Gene:

RNA type for CCDC144NL-AS1 Gene

lncRNA

Aliases for CCDC144NL-AS1 Gene

External Ids for CCDC144NL-AS1 Gene

Previous GeneCards Identifiers for CCDC144NL-AS1 Gene

  • GC17P021080
  • GC17P022294
  • GC17P025043
  • GC17P025349
  • GC17P025414
  • GC17P026175
  • GC17P022732
  • GC17P023064
  • GC17P023352
  • GC17P023644
  • GC17P023948
  • GC17P024293
  • GC17P024574
  • GC17P024839
  • GC17P026783
  • GC17P027565

Summaries for CCDC144NL-AS1 Gene

GeneCards Summary for CCDC144NL-AS1 Gene

CCDC144NL-AS1 (CCDC144NL Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CCDC144NL-AS1 include Glioma Susceptibility 1 and Bladder Cancer.

Additional gene information for CCDC144NL-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CCDC144NL-AS1 Gene

Genomics for CCDC144NL-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CCDC144NL-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CCDC144NL-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CCDC144NL-AS1 Gene

Latest Assembly
chr17:20,868,432-21,002,276
(GRCh38/hg38)
Size:
133,845 bases
Orientation:
Plus strand

Previous Assembly
chr17:20,771,840-20,833,354
(GRCh37/hg19 by Entrez Gene)
Size:
61,515 bases
Orientation:
Plus strand

chr17:20,771,746-20,905,589
(GRCh37/hg19 by Ensembl)
Size:
133,844 bases
Orientation:
Plus strand

Genomic View for CCDC144NL-AS1 Gene

Genes around CCDC144NL-AS1 on UCSC Golden Path with GeneCards custom track
CCDC144NL-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
CCDC144NL-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC144NL-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC144NL-AS1 Gene

Proteins for CCDC144NL-AS1 Gene

Post-translational modifications for CCDC144NL-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCDC144NL-AS1 Gene

Domains & Families for CCDC144NL-AS1 Gene

Gene Families for CCDC144NL-AS1 Gene

genes like me logo Genes that share domains with CCDC144NL-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CCDC144NL-AS1 Gene

Function for CCDC144NL-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC144NL-AS1 Gene

Localization for CCDC144NL-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCDC144NL-AS1 Gene

Pathways & Interactions for CCDC144NL-AS1 Gene

PathCards logo

SuperPathways for CCDC144NL-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CCDC144NL-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CCDC144NL-AS1 Gene

Drugs & Compounds for CCDC144NL-AS1 Gene

No Compound Related Data Available

Transcripts for CCDC144NL-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CCDC144NL-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000146A87_9606 lncRNA 3731 4

Ensembl: ENST00000577537 (view in UCSC) ,

LncBook: HSALNT0238474,

LNCipedia: CCDC144NL-AS1:1,

NONCODE: NONHSAT146843.2,

URS00001D2439_9606 lncRNA 1822 4

Ensembl: ENST00000580278 (view in UCSC) ,

LncBook: HSALNT0238512,

LNCipedia: CCDC144NL-AS1:11,

NONCODE: NONHSAT146856.2,

URS0000297BCC_9606 lncRNA 1188 4

Ensembl: ENST00000581958 (view in UCSC) ,

LncBook: HSALNT0238529,

LNCipedia: CCDC144NL-AS1:22,

NONCODE: NONHSAT146864.2,

URS0000225A47_9606 lncRNA 889 4

Ensembl: ENST00000577860 (view in UCSC) ,

LncBook: HSALNT0238493,

LNCipedia: CCDC144NL-AS1:6,

NONCODE: NONHSAT146847.2,

URS00007E02AF_9606 lncRNA 842 4

Ensembl: ENST00000437829 (view in UCSC) ,

LncBook: HSALNT0238527,

LNCipedia: CCDC144NL-AS1:21,

NONCODE: NONHSAT174997.1,

CCDC144NL-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CCDC144NL-AS1 Gene

12 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC144NL-AS1 Gene

No ASD Table

Relevant External Links for CCDC144NL-AS1 Gene

GeneLoc Exon Structure for
CCDC144NL-AS1

Expression for CCDC144NL-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CCDC144NL-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CCDC144NL-AS1

genes like me logo Genes that share expression patterns with CCDC144NL-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC144NL-AS1 Gene

Orthologs for CCDC144NL-AS1 Gene

Evolution for CCDC144NL-AS1 Gene

ENSEMBL:
Gene Tree for CCDC144NL-AS1 (if available)
TreeFam:
Gene Tree for CCDC144NL-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for CCDC144NL-AS1

No data available for Orthologs for CCDC144NL-AS1 Gene

Paralogs for CCDC144NL-AS1 Gene

No data available for Paralogs for CCDC144NL-AS1 Gene

Variants for CCDC144NL-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for CCDC144NL-AS1 Gene

SNP ID Clinical significance and condition Chr 17 pos Variation AA Info Type
709929 Benign: not provided 20,895,923(+) T/C
NR_164128.1(CCDC144NL):n.241A>G
NON_CODING_TRANSCRIPT
709930 Benign: not provided 20,895,994(+) C/T
NR_164128.1(CCDC144NL):n.170G>A
NON_CODING_TRANSCRIPT
709931 Benign: not provided 20,895,995(+) C/T
NR_164128.1(CCDC144NL):n.169G>A
NON_CODING_TRANSCRIPT
769432 Benign: not provided 20,895,806(+) A/G
NR_164128.1(CCDC144NL):n.358T>C
NON_CODING_TRANSCRIPT
773068 Likely Benign: not provided 20,895,905(+) T/C
NR_164128.1(CCDC144NL):n.259A>G
NON_CODING_TRANSCRIPT

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for CCDC144NL-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for CCDC144NL-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1432n106 CNV duplication 24896259
dgv3122n100 CNV loss 25217958
dgv5502n54 CNV gain 21841781
esv24431 CNV loss 19812545
esv2673401 CNV deletion 23128226
esv2751619 CNV gain 17911159
esv3640216 CNV loss 21293372
esv3640219 CNV loss 21293372
nsv1059146 CNV gain 25217958
nsv1064365 CNV gain 25217958
nsv1075928 CNV duplication 25765185
nsv1075929 CNV duplication 25765185
nsv1078306 OTHER inversion 25765185
nsv1109053 CNV deletion 24896259
nsv1109054 CNV deletion 24896259
nsv1116195 CNV deletion 24896259
nsv1116196 CNV deletion 24896259
nsv1123100 CNV deletion 24896259
nsv1134611 CNV deletion 24896259
nsv1138508 CNV deletion 24896259
nsv1150352 CNV duplication 26484159
nsv953851 CNV duplication 24416366
nsv960439 CNV duplication 23825009
nsv960440 CNV duplication 23825009
nsv962289 CNV duplication 23825009

Additional Variant Information for CCDC144NL-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC144NL-AS1
Leiden Open Variation Database (LOVD)
CCDC144NL-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCDC144NL-AS1 Gene

Disorders for CCDC144NL-AS1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for CCDC144NL-AS1 Gene - From: LNC

Disorder Aliases PubMed IDs
glioma susceptibility 1
  • glm1
bladder cancer
  • bladder cancer, somatic
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for CCDC144NL-AS1

genes like me logo Genes that share disorders with CCDC144NL-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CCDC144NL-AS1 Gene

Publications for CCDC144NL-AS1 Gene

  1. Long noncoding RNA CCDC144NL-AS1 knockdown induces naïve-like state conversion of human pluripotent stem cells. (PMID: 31358062) Wang Y … Li S (Stem cell research & therapy 2019) 2 3
  2. Expression profiles analysis reveals an integrated miRNA-lncRNA signature to predict survival in ovarian cancer patients with wild-type BRCA1/2. (PMID: 28978132) Guo L … Li Q (Oncotarget 2017) 2 3
  3. Knockdown of long noncoding RNA CCDC144NL-AS1 attenuates migration and invasion phenotypes in endometrial stromal cells from endometriosis†. (PMID: 30496345) Zhang C … Chang X (Biology of reproduction 2019) 3
  4. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3
  5. Comprehensive analysis of differentially expressed profiles of lncRNAs and circRNAs with associated co-expression and ceRNA networks in bladder carcinoma. (PMID: 27363013) Huang M … Chen J (Oncotarget 2016) 72

Products for CCDC144NL-AS1 Gene

Sources for CCDC144NL-AS1 Gene