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Aliases for CCDC144NL-AS1 Gene

Subcategory (RNA class) for CCDC144NL-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CCDC144NL-AS1 Gene

  • CCDC144NL Antisense RNA 1 2 3 5

External Ids for CCDC144NL-AS1 Gene

Previous GeneCards Identifiers for CCDC144NL-AS1 Gene

  • GC17P021080
  • GC17P022294
  • GC17P022732
  • GC17P023064
  • GC17P023352
  • GC17P023644
  • GC17P023948

Summaries for CCDC144NL-AS1 Gene

GeneCards Summary for CCDC144NL-AS1 Gene

CCDC144NL-AS1 (CCDC144NL Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CCDC144NL-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC144NL-AS1 Gene

Genomics for CCDC144NL-AS1 Gene

GeneHancer (GH) Regulatory Elements for CCDC144NL-AS1 Gene

Promoters and enhancers for CCDC144NL-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I021039 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 30.1 +173.8 173837 5.5 ZFP64 FEZF1 DMAP1 YY1 ZNF213 ZNF143 SP3 NFYC ZNF610 ZNF585B USP22 MEIS3P2 UPF3AP2 ENSG00000266050 CCDC144NL-AS1 DHRS7B RPL21P120 C17orf51 USP32P3 PIR42715
GH17I021031 Enhancer 1.2 Ensembl ENCODE dbSUPER 30.2 +165.7 165705 4.5 PKNOX1 ZBTB40 SCRT2 ETV6 FOS ATF7 IKZF2 RUNX3 ZNF362 CBFB CCDC144NL-AS1 USP22 DHRS7B PIR42715
GH17I021051 Enhancer 1.1 Ensembl ENCODE dbSUPER 29.9 +183.8 183762 1.6 HDAC1 HMG20B PHF21A L3MBTL2 CEBPB REST CEBPG MITF CTBP1 POLR2A CCDC144NL-AS1 USP22 DHRS7B LINC01563
GH17I020954 Enhancer 0.8 Ensembl ENCODE 39.2 +87.1 87134 1.7 RXRA HLF USF2 CEBPB YY1 MITF ATF3 FOS HNF4A ENSG00000244456 CCDC144NL-AS1 GC17M020945 LOC339260 LOC105369205
GH17I020962 Enhancer 0.4 ENCODE 34.4 +93.9 93885 0.1 POU5F1 ZNF143 ENSG00000264660 CCDC144NL-AS1 ENSG00000244456 LOC339260 LOC105369205
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CCDC144NL-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CCDC144NL-AS1 Gene

Genomic Locations for CCDC144NL-AS1 Gene
chr17:20,868,433-21,002,276
(GRCh38/hg38)
Size:
133,844 bases
Orientation:
Plus strand

Genomic View for CCDC144NL-AS1 Gene

Genes around CCDC144NL-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC144NL-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC144NL-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC144NL-AS1 Gene

Proteins for CCDC144NL-AS1 Gene

Post-translational modifications for CCDC144NL-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCDC144NL-AS1 Gene

Domains & Families for CCDC144NL-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC144NL-AS1 Gene

Function for CCDC144NL-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC144NL-AS1 Gene

Localization for CCDC144NL-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCDC144NL-AS1 Gene

Pathways & Interactions for CCDC144NL-AS1 Gene

SuperPathways for CCDC144NL-AS1 Gene

No Data Available

Interacting Proteins for CCDC144NL-AS1 Gene

Gene Ontology (GO) - Biological Process for CCDC144NL-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC144NL-AS1 Gene

Drugs & Compounds for CCDC144NL-AS1 Gene

No Compound Related Data Available

Transcripts for CCDC144NL-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC144NL-AS1 Gene

No ASD Table

Relevant External Links for CCDC144NL-AS1 Gene

GeneLoc Exon Structure for
CCDC144NL-AS1
ECgene alternative splicing isoforms for
CCDC144NL-AS1

Expression for CCDC144NL-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCDC144NL-AS1 Gene

genes like me logo Genes that share expression patterns with CCDC144NL-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC144NL-AS1 Gene

Orthologs for CCDC144NL-AS1 Gene

Evolution for CCDC144NL-AS1 Gene

ENSEMBL:
Gene Tree for CCDC144NL-AS1 (if available)
TreeFam:
Gene Tree for CCDC144NL-AS1 (if available)

No data available for Orthologs for CCDC144NL-AS1 Gene

Paralogs for CCDC144NL-AS1 Gene

No data available for Paralogs for CCDC144NL-AS1 Gene

Variants for CCDC144NL-AS1 Gene

Sequence variations from dbSNP and Humsavar for CCDC144NL-AS1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000061149 -- 20,892,386(+) G/A non_coding_transcript_variant
rs1000093140 -- 20,905,357(+) TGTTGTT/TGTT downstream_transcript_variant
rs1000093213 -- 20,892,204(+) T/C intron_variant
rs1000113790 -- 20,868,369(+) G/A upstream_transcript_variant
rs1000180210 -- 20,897,406(+) C/G intron_variant

Additional Variant Information for CCDC144NL-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC144NL-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CCDC144NL-AS1 Gene

Disorders for CCDC144NL-AS1 Gene

Additional Disease Information for CCDC144NL-AS1

No disorders were found for CCDC144NL-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC144NL-AS1 Gene

Publications for CCDC144NL-AS1 Gene

  1. Expression profiles analysis reveals an integrated miRNA-lncRNA signature to predict survival in ovarian cancer patients with wild-type BRCA1/2. (PMID: 28978132) Guo L … Li Q (Oncotarget 2017) 2 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  5. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for CCDC144NL-AS1 Gene

Sources for CCDC144NL-AS1 Gene

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