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Aliases for CCDC144CP Gene

Aliases for CCDC144CP Gene

  • Coiled-Coil Domain Containing 144C, Pseudogene 2 3 5
  • CCDC144C 3 4
  • Coiled-Coil Domain-Containing Protein 144C Pseudogene 4
  • Coiled-Coil Domain Containing 144 Pseudogene 3
  • Coiled-Coil Domain Containing 144C 2

External Ids for CCDC144CP Gene

Previous HGNC Symbols for CCDC144CP Gene

  • CCDC144C

Previous GeneCards Identifiers for CCDC144CP Gene

  • GC17P020234
  • GC17P020237

Summaries for CCDC144CP Gene

GeneCards Summary for CCDC144CP Gene

CCDC144CP (Coiled-Coil Domain Containing 144C, Pseudogene) is a Pseudogene.

Additional gene information for CCDC144CP Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC144CP Gene

Genomics for CCDC144CP Gene

GeneHancer (GH) Regulatory Elements for CCDC144CP Gene

Promoters and enhancers for CCDC144CP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I020320 Promoter/Enhancer 1.3 Ensembl ENCODE 550.8 +0.0 36 1.2 PKNOX1 ATF1 NFIB RB1 SIN3A ZNF2 RAD21 RFX5 ZNF121 ARID2 CCDC144CP PIR36833 RNU6-467P ENSG00000266839 LGALS9B KRT17P6 ENSG00000263494
GH17I019866 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 5.9 -453.7 -453705 2.1 SIN3A ZNF2 RAD21 ZNF335 GLIS2 ZNF143 RUNX3 KLF13 EGR2 SMARCA5 ULK2 ENSG00000276406 AKAP10 CCDC144CP TRG-CCC3-1 GC17M019789
GH17I019723 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 4.6 -596.5 -596529 1.5 RXRA MAX KLF4 YY1 ZNF217 POLR2A HNF4A CHD2 TCF7L2 ENSG00000252349 SLC47A2 ENSG00000262319 CCDC144CP MAPK7 ENSG00000262681 ENSG00000264785
GH17I020895 Promoter 1.3 EPDnew Ensembl 4.1 +574.9 574937 1 CTCF POLR2A NRF1 ZBTB33 CCDC144NL PIR57151 RNU6-1178P PIR45393 ENSG00000266369 CCDC144CP CCDC144NL-AS1 GC17P024747
GH17I019550 Enhancer 1 ENCODE dbSUPER 4.1 -769.6 -769626 2.5 ELF3 FOXA2 THRB ZSCAN9 RAD21 RARA YY1 SLC30A9 CREM MIXL1 ENSG00000231625 AKAP10 CCDC144CP SNORA59B TRW-CCA2-1 SLC47A1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CCDC144CP on UCSC Golden Path with GeneCards custom track

Genomic Locations for CCDC144CP Gene

Genomic Locations for CCDC144CP Gene
chr17:20,321,164-20,403,557
(GRCh38/hg38)
Size:
82,394 bases
Orientation:
Plus strand
chr17:20,224,477-20,306,870
(GRCh37/hg19)

Genomic View for CCDC144CP Gene

Genes around CCDC144CP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC144CP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC144CP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC144CP Gene

Proteins for CCDC144CP Gene

  • Protein details for CCDC144CP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IYA2-C144C_HUMAN
    Recommended name:
    Putative coiled-coil domain-containing protein 144C
    Protein Accession:
    Q8IYA2
    Secondary Accessions:
    • B7WNP5

    Protein attributes for CCDC144CP Gene

    Size:
    1237 amino acids
    Molecular mass:
    143112 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCDC144CP Gene

Post-translational modifications for CCDC144CP Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CCDC144CP Gene

Domains & Families for CCDC144CP Gene

Protein Domains for CCDC144CP Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CCDC144CP Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8IYA2

UniProtKB/Swiss-Prot:

C144C_HUMAN :
  • Belongs to the CCDC144 family.
Family:
  • Belongs to the CCDC144 family.
genes like me logo Genes that share domains with CCDC144CP: view

No data available for Gene Families for CCDC144CP Gene

Function for CCDC144CP Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC144CP Gene

Localization for CCDC144CP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCDC144CP Gene

Pathways & Interactions for CCDC144CP Gene

SuperPathways for CCDC144CP Gene

No Data Available

Interacting Proteins for CCDC144CP Gene

Gene Ontology (GO) - Biological Process for CCDC144CP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC144CP Gene

Drugs & Compounds for CCDC144CP Gene

No Compound Related Data Available

Transcripts for CCDC144CP Gene

mRNA/cDNA for CCDC144CP Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCDC144CP Gene

Coiled-coil domain containing 144C, pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC144CP Gene

No ASD Table

Relevant External Links for CCDC144CP Gene

GeneLoc Exon Structure for
CCDC144CP
ECgene alternative splicing isoforms for
CCDC144CP

Expression for CCDC144CP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCDC144CP Gene

mRNA differential expression in normal tissues according to GTEx for CCDC144CP Gene

This gene is overexpressed in Brain - Cerebellum (x8.7) and Testis (x7.9).

Protein differential expression in normal tissues from HIPED for CCDC144CP Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CCDC144CP Gene



Protein tissue co-expression partners for CCDC144CP Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of CCDC144CP Gene:

CCDC144CP

SOURCE GeneReport for Unigene cluster for CCDC144CP Gene:

Hs.462475
genes like me logo Genes that share expression patterns with CCDC144CP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC144CP Gene

Orthologs for CCDC144CP Gene

Evolution for CCDC144CP Gene

ENSEMBL:
Gene Tree for CCDC144CP (if available)
TreeFam:
Gene Tree for CCDC144CP (if available)

No data available for Orthologs for CCDC144CP Gene

Paralogs for CCDC144CP Gene

(5) SIMAP similar genes for CCDC144CP Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with CCDC144CP: view

No data available for Paralogs for CCDC144CP Gene

Variants for CCDC144CP Gene

Sequence variations from dbSNP and Humsavar for CCDC144CP Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000094745 -- 20,329,211(+) G/A intron_variant
rs1000113055 -- 20,400,947(+) G/T intron_variant
rs1000150017 -- 20,355,002(+) C/T intron_variant
rs1000203517 -- 20,348,505(+) TTGTT/TT intron_variant
rs1000238630 -- 20,369,479(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC144CP Gene

Variant ID Type Subtype PubMed ID
esv2672480 CNV deletion 23128226
esv2758680 CNV gain 17122850
esv2761953 CNV gain 21179565
esv32786 CNV gain+loss 17666407
esv3572476 CNV gain 25503493
esv3582569 CNV loss 25503493
esv3640197 CNV loss 21293372
esv3640198 CNV loss 21293372
esv3640199 CNV gain 21293372
nsv1055600 CNV loss 25217958
nsv1057389 CNV loss 25217958
nsv1059504 CNV gain 25217958
nsv1061317 CNV gain 25217958
nsv1064854 CNV gain 25217958
nsv1066679 CNV gain 25217958
nsv1116193 CNV deletion 24896259
nsv2004 CNV insertion 18451855
nsv2005 CNV deletion 18451855
nsv428338 CNV gain 18775914
nsv469852 CNV gain 16826518
nsv471495 CNV gain 19718026
nsv520772 CNV loss 19592680
nsv521025 CNV gain 19592680
nsv574581 CNV loss 21841781
nsv833397 CNV loss 17160897
nsv833398 CNV loss 17160897
nsv962286 CNV duplication 23825009
nsv978388 CNV duplication 23825009
nsv978389 CNV duplication 23825009

Additional Variant Information for CCDC144CP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC144CP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCDC144CP Gene

Disorders for CCDC144CP Gene

Additional Disease Information for CCDC144CP

No disorders were found for CCDC144CP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC144CP Gene

Publications for CCDC144CP Gene

  1. Structure and evolution of the Smith-Magenis syndrome repeat gene clusters, SMS-REPs. (PMID: 11997339) Park SS … Lupski JR (Genome research 2002) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody MC … Nusbaum C (Nature 2006) 4 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for CCDC144CP Gene

Sources for CCDC144CP Gene

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