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Aliases for CCDC13-AS1 Gene

Subcategory (RNA class) for CCDC13-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CCDC13-AS1 Gene

  • CCDC13 Antisense RNA 1 2 3 5
  • CCDC13 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for CCDC13-AS1 Gene

Previous GeneCards Identifiers for CCDC13-AS1 Gene

  • GC00U933605
  • GC03P042775

Summaries for CCDC13-AS1 Gene

GeneCards Summary for CCDC13-AS1 Gene

CCDC13-AS1 (CCDC13 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CCDC13-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC13-AS1 Gene

Genomics for CCDC13-AS1 Gene

GeneHancer (GH) Regulatory Elements for CCDC13-AS1 Gene

Promoters and enhancers for CCDC13-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I042732 Enhancer 1.1 ENCODE dbSUPER 572.2 +0.6 645 2.3 ELF3 FOXA2 ARID4B DMAP1 RAD21 DNMT3B THRB ZNF48 RARA HSF1 CCDC13-AS1 HHATL LINC02158 CCDC13
GH03I042733 Enhancer 0.4 dbSUPER 572.6 -1.5 -1470 0.7 HNF4A THRB RXRB CCDC13-AS1 HHATL CCDC13
GH03I042759 Enhancer 1.2 Ensembl ENCODE dbSUPER 34.6 +29.0 29047 3.6 ZFP64 RARA YY1 ATF7 THAP11 RXRA CEBPB ZNF518A ZNF781 ZNF555 CCDC13-AS1 KRBOX1 SEC22C POMGNT2 ZNF662 HIGD1A LINC02158 CCDC13 ENSG00000280571
GH03I042772 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 23 +40.6 40575 1.4 PKNOX1 ATF1 SMAD1 SIN3A BMI1 IRF4 RFX5 YY1 ZNF207 ZNF143 CCDC13 CCDC13-AS1 HIGD1A LINC02158 ENSG00000280571
GH03I042739 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 21.6 +7.5 7461 1.5 SCRT1 TFE3 SCRT2 ZNF623 ATF2 ZKSCAN1 CCDC13-AS1 HHATL LINC02158 CCDC13
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CCDC13-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CCDC13-AS1 Gene

Genomic Locations for CCDC13-AS1 Gene
chr3:42,732,575-42,746,768
(GRCh38/hg38)
Size:
14,194 bases
Orientation:
Plus strand
chr3:42,774,067-42,788,260
(GRCh37/hg19)

Genomic View for CCDC13-AS1 Gene

Genes around CCDC13-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC13-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC13-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC13-AS1 Gene

Proteins for CCDC13-AS1 Gene

Post-translational modifications for CCDC13-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCDC13-AS1 Gene

Domains & Families for CCDC13-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC13-AS1 Gene

Function for CCDC13-AS1 Gene

Phenotypes From GWAS Catalog for CCDC13-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC13-AS1 Gene

Localization for CCDC13-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCDC13-AS1 Gene

Pathways & Interactions for CCDC13-AS1 Gene

SuperPathways for CCDC13-AS1 Gene

No Data Available

Interacting Proteins for CCDC13-AS1 Gene

Gene Ontology (GO) - Biological Process for CCDC13-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC13-AS1 Gene

Drugs & Compounds for CCDC13-AS1 Gene

No Compound Related Data Available

Transcripts for CCDC13-AS1 Gene

mRNA/cDNA for CCDC13-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC13-AS1 Gene

No ASD Table

Relevant External Links for CCDC13-AS1 Gene

GeneLoc Exon Structure for
CCDC13-AS1
ECgene alternative splicing isoforms for
CCDC13-AS1

Expression for CCDC13-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCDC13-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CCDC13-AS1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x4.6).
genes like me logo Genes that share expression patterns with CCDC13-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC13-AS1 Gene

Orthologs for CCDC13-AS1 Gene

Evolution for CCDC13-AS1 Gene

ENSEMBL:
Gene Tree for CCDC13-AS1 (if available)
TreeFam:
Gene Tree for CCDC13-AS1 (if available)

No data available for Orthologs for CCDC13-AS1 Gene

Paralogs for CCDC13-AS1 Gene

No data available for Paralogs for CCDC13-AS1 Gene

Variants for CCDC13-AS1 Gene

Sequence variations from dbSNP and Humsavar for CCDC13-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000127617 -- 42,732,241(+) G/A upstream_transcript_variant
rs1000459528 -- 42,730,645(+) C/T upstream_transcript_variant
rs1000495342 -- 42,731,055(+) G/A upstream_transcript_variant
rs1000555669 -- 42,743,449(+) G/T intron_variant
rs1000740998 -- 42,737,072(+) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC13-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv4728n100 CNV loss 25217958
nsv3782 CNV insertion 18451855

Additional Variant Information for CCDC13-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC13-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCDC13-AS1 Gene

Disorders for CCDC13-AS1 Gene

Additional Disease Information for CCDC13-AS1

No disorders were found for CCDC13-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC13-AS1 Gene

Publications for CCDC13-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for CCDC13-AS1 Gene

Sources for CCDC13-AS1 Gene

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