Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CBX3P9 Gene

Subcategory (RNA class) for CBX3P9 Gene

lncRNA

Aliases for CBX3P9 Gene

  • Chromobox 3 Pseudogene 9 2 3 5
  • Chromobox Homolog 3 Pseudogene 9 2 3
  • Chromobox Homolog 3 (HP1 Gamma Homolog, Drosophila) Pseudogene 3

External Ids for CBX3P9 Gene

ORGUL Members for CBX3P9 Gene

Previous GeneCards Identifiers for CBX3P9 Gene

  • GC06M116776

Summaries for CBX3P9 Gene

GeneCards Summary for CBX3P9 Gene

CBX3P9 (Chromobox 3 Pseudogene 9) is a Pseudogene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for CBX3P9 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for CBX3P9

Additional gene information for CBX3P9 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for CBX3P9 Gene

Genomics for CBX3P9 Gene

GeneHancer (GH) Regulatory Elements for CBX3P9 Gene

Promoters and enhancers for CBX3P9 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J116570 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 14.3 -118.3 -118275 3 CLOCK ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 RWDD1 RSPH4A CBX3P9
GH06J116276 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.6 +174.4 174380 5.6 HDGF FOXA2 SMAD1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1 TSPYL1 PIR59102 DSE CALHM6 TSPYL4 CALHM4 TRAPPC3L KRT18P22 CBX3P9 ENSG00000244158
GH06J116615 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 10.5 -162.8 -162840 1.2 HDGF PKNOX1 ARID4B SIN3A ZNF2 ZBTB7B ZNF121 GLIS2 ZNF207 FOS RSPH4A DSE CBX3P9 RWDD1 GC06P116597 ZUP1
GH06J116384 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.7 +64.1 64109 9.7 PKNOX1 MZF1 BATF IRF4 ZNF366 ATF7 FOS ETV6 BCLAF1 IKZF2 DSE CALHM6 CALHM4 CBX3P9 KRT18P22 ENSG00000244158 ENSG00000234117 TRAPPC3L TSPYL1 CALHM5
GH06J116409 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 12.1 +42.5 42500 3.1 ZSCAN4 BATF IRF4 ZNF335 ZNF213 ATF7 ETV6 BCLAF1 IKZF2 RUNX3 CALHM6 DSE CBX3P9 KRT18P22 ENSG00000244158 CALHM4 ENSG00000234117 RWDD1 ENSG00000285446 PIR34878
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CBX3P9 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CBX3P9 Gene

Genomic Locations for CBX3P9 Gene
chr6:116,453,014-116,453,565
(GRCh38/hg38)
Size:
552 bases
Orientation:
Minus strand
chr6:116,774,177-116,774,728
(GRCh37/hg19)

Genomic View for CBX3P9 Gene

Genes around CBX3P9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CBX3P9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CBX3P9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CBX3P9 Gene

ORGUL Member Location for CBX3P9 Gene

ORGUL Member Location for CBX3P9 gene

Function for CBX3P9 Gene

Phenotypes From GWAS Catalog for CBX3P9 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CBX3P9 Gene

Localization for CBX3P9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CBX3P9 Gene

Pathways & Interactions for CBX3P9 Gene

SuperPathways for CBX3P9 Gene

No Data Available

Interacting Proteins for CBX3P9 Gene

Gene Ontology (GO) - Biological Process for CBX3P9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CBX3P9 Gene

Drugs & Compounds for CBX3P9 Gene

No Compound Related Data Available

Transcripts for CBX3P9 Gene

fRNAdb Secondary structures for CBX3P9 Gene

  • FR141133

mRNA/cDNA for CBX3P9 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CBX3P9 Gene

No ASD Table

Relevant External Links for CBX3P9 Gene

GeneLoc Exon Structure for
CBX3P9
ECgene alternative splicing isoforms for
CBX3P9

Expression for CBX3P9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CBX3P9 Gene

NURSA nuclear receptor signaling pathways regulating expression of CBX3P9 Gene:

CBX3P9
genes like me logo Genes that share expression patterns with CBX3P9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CBX3P9 Gene

Orthologs for CBX3P9 Gene

Evolution for CBX3P9 Gene

ENSEMBL:
Gene Tree for CBX3P9 (if available)
TreeFam:
Gene Tree for CBX3P9 (if available)

No data available for Orthologs for CBX3P9 Gene

Paralogs for CBX3P9 Gene

No data available for Paralogs for CBX3P9 Gene

Variants for CBX3P9 Gene

Additional Variant Information for CBX3P9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CBX3P9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CBX3P9 Gene

Disorders for CBX3P9 Gene

No disorders were found for CBX3P9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CBX3P9 Gene

Publications for CBX3P9 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for CBX3P9 Gene

Sources for CBX3P9 Gene

Content
Loading form....