Aliases for CBX3P2 Gene

Aliases for CBX3P2 Gene

  • Chromobox 3 Pseudogene 2 2 3
  • Chromobox Homolog 3 Pseudogene 2 2 3
  • Chromobox Homolog 3 (HP1 Gamma Homolog, Drosophila) Pseudogene 3
  • Chromobox Protein Homolog 3 (CBX3) Pseudogene 5
  • AP005061.1 5

External Ids for CBX3P2 Gene

Summaries for CBX3P2 Gene

GeneCards Summary for CBX3P2 Gene

CBX3P2 (Chromobox 3 Pseudogene 2) is a Pseudogene.

Additional gene information for CBX3P2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CBX3P2 Gene

Genomics for CBX3P2 Gene

GeneHancer (GH) Regulatory Elements for CBX3P2 Gene

Promoters and enhancers for CBX3P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J002653 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 505.7 -1.4 -1374 6.5 ZSCAN5C SIN3A NRF1 POLR2G NCOR1 GTF2E2 PHF8 JUND PHB2 FOS SMCHD1 CBX3P2 lnc-METTL4-5 METTL4 EMILIN2 NDC80 LPIN2 piR-43107-127
GH18J003296 Promoter/Enhancer 1.4 ENCODE CraniofacialAtlas 19.8 -641.9 -641927 1.7 ZNF217 EP300 CTCF POLR2G SP1 NCOR1 RBAK ZNF639 ZNF10 ZIC2 lnc-MYOM1-10 CBX3P2 METTL4 ENSG00000266783 piR-57460-293 ENSG00000266578
GH18J003461 Enhancer 1 Ensembl ENCODE dbSUPER 10.1 -807.5 -807505 3.4 EP300 ARNT TRIM24 TRIM28 POLR2A PBX2 XRCC3 ZNF280A CBX1 ZC3H8 METTL4 SMCHD1 CBX3P2 ENSG00000266783 GAPLINC lnc-DLGAP1-4 lnc-MYL12B-6 lnc-DLGAP1-1 LOC105371965
GH18J002662 Enhancer 0.6 dbSUPER 10.7 -9.7 -9694 5.5 ZNF316 ZFHX2 ZNF18 HDGF ZBTB33 ZNF202 BHLHE40 ZNF280D EGR2 ZNF280C NONHSAG023208.2 METTL4 NDC80 CBX3P2 EMILIN2 SMCHD1 piR-43107-127
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CBX3P2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CBX3P2 Gene

Genomic Locations for CBX3P2 Gene
chr18:2,652,170-2,655,395
(GRCh38/hg38)
Size:
3,226 bases
Orientation:
Minus strand
chr18:2,652,169-2,655,394
(GRCh37/hg19)
Size:
3,226 bases
Orientation:
Minus strand

Genomic View for CBX3P2 Gene

Genes around CBX3P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CBX3P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CBX3P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CBX3P2 Gene

Proteins for CBX3P2 Gene

Post-translational modifications for CBX3P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CBX3P2 Gene

Domains & Families for CBX3P2 Gene

Suggested Antigen Peptide Sequences for CBX3P2 Gene

GenScript: Design optimal peptide antigens:
  • LOC645158 protein (Q8WVE2_HUMAN)

No data available for Gene Families , Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CBX3P2 Gene

Function for CBX3P2 Gene

Phenotypes for CBX3P2 Gene

genes like me logo Genes that share phenotypes with CBX3P2: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CBX3P2 Gene

Localization for CBX3P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CBX3P2 Gene

Pathways & Interactions for CBX3P2 Gene

PathCards logo

SuperPathways for CBX3P2 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for CBX3P2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CBX3P2 Gene

Drugs & Compounds for CBX3P2 Gene

No Compound Related Data Available

Transcripts for CBX3P2 Gene

mRNA/cDNA for CBX3P2 Gene

2 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CBX3P2 Gene

No ASD Table

Relevant External Links for CBX3P2 Gene

GeneLoc Exon Structure for
CBX3P2

Expression for CBX3P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CBX3P2 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CBX3P2

SOURCE GeneReport for Unigene cluster for CBX3P2 Gene:

Hs.712861
genes like me logo Genes that share expression patterns with CBX3P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CBX3P2 Gene

Orthologs for CBX3P2 Gene

Evolution for CBX3P2 Gene

ENSEMBL:
Gene Tree for CBX3P2 (if available)
TreeFam:
Gene Tree for CBX3P2 (if available)

No data available for Orthologs for CBX3P2 Gene

Paralogs for CBX3P2 Gene

No data available for Paralogs for CBX3P2 Gene

Variants for CBX3P2 Gene

Structural Variations from Database of Genomic Variants (DGV) for CBX3P2 Gene

Variant ID Type Subtype PubMed ID
esv2761986 CNV gain 21179565
esv3893063 CNV loss 25118596
nsv1065848 CNV gain 25217958
nsv482935 CNV loss 15286789
nsv576251 CNV gain 21841781

Additional Variant Information for CBX3P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CBX3P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for CBX3P2 Gene

Disorders for CBX3P2 Gene

Additional Disease Information for CBX3P2

No disorders were found for CBX3P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CBX3P2 Gene

Publications for CBX3P2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for CBX3P2 Gene

Sources for CBX3P2 Gene