Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CBX3P1 Gene

Aliases for CBX3P1 Gene

  • Chromobox 3 Pseudogene 1 2 3 5
  • Chromobox Homolog 3 Pseudogene 1 2 3
  • Chromobox Homolog 3 (HP1 Gamma Homolog, Drosophila) Pseudogene 3
  • Chromobox Homolog 3 Gamma Pseudogene 3
  • HP1-Hs-Gamma Pseudogene 3

External Ids for CBX3P1 Gene

Previous GeneCards Identifiers for CBX3P1 Gene

  • GC11P027526

Summaries for CBX3P1 Gene

GeneCards Summary for CBX3P1 Gene

CBX3P1 (Chromobox 3 Pseudogene 1) is a Pseudogene.

Additional gene information for CBX3P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CBX3P1 Gene

Genomics for CBX3P1 Gene

GeneHancer (GH) Regulatory Elements for CBX3P1 Gene

Promoters and enhancers for CBX3P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J027807 Enhancer 0.6 ENCODE 650.7 +1.5 1512 0.1 STAT3 CEBPB RCOR1 EP300 PRDM1 BRCA1 TCF7L2 CHD2 CBX3P1 GC11P027827 ENSG00000255496
GH11J028105 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 14.6 +302.3 302292 6.2 ZFP64 DMAP1 IRF4 YY1 E2F8 ZNF143 SP3 NFYC ZC3H11A SSRP1 METTL15 KIF18A LINC00678 ENSG00000255094 CBX3P1 ENSG00000249867 BDNF GC11M028129
GH11J027796 Enhancer 0.8 ENCODE 0.4 -9.9 -9863 0.8 INSM2 KLF17 MZF1 FEZF1 ZNF335 ZNF121 SCRT2 KLF7 ZNF398 ZNF488 CBX3P1 GC11M027760 ENSG00000255496
GH11J027770 Enhancer 0.5 ENCODE 0.3 -35.5 -35528 0.2 JUND MAX CEBPB EP300 GC11M027760 CBX3P1 ENSG00000255496
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CBX3P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CBX3P1 Gene

Genomic Locations for CBX3P1 Gene
chr11:27,806,317-27,808,558
(GRCh38/hg38)
Size:
2,242 bases
Orientation:
Plus strand
chr11:27,827,864-27,830,105
(GRCh37/hg19)

Genomic View for CBX3P1 Gene

Genes around CBX3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CBX3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CBX3P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CBX3P1 Gene

Function for CBX3P1 Gene

Phenotypes From GWAS Catalog for CBX3P1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CBX3P1 Gene

Localization for CBX3P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CBX3P1 Gene

Pathways & Interactions for CBX3P1 Gene

SuperPathways for CBX3P1 Gene

No Data Available

Interacting Proteins for CBX3P1 Gene

Gene Ontology (GO) - Biological Process for CBX3P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CBX3P1 Gene

Drugs & Compounds for CBX3P1 Gene

No Compound Related Data Available

Transcripts for CBX3P1 Gene

mRNA/cDNA for CBX3P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CBX3P1 Gene

No ASD Table

Relevant External Links for CBX3P1 Gene

GeneLoc Exon Structure for
CBX3P1
ECgene alternative splicing isoforms for
CBX3P1

Expression for CBX3P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CBX3P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of CBX3P1 Gene:

CBX3P1
genes like me logo Genes that share expression patterns with CBX3P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CBX3P1 Gene

Orthologs for CBX3P1 Gene

Evolution for CBX3P1 Gene

ENSEMBL:
Gene Tree for CBX3P1 (if available)
TreeFam:
Gene Tree for CBX3P1 (if available)

No data available for Orthologs for CBX3P1 Gene

Paralogs for CBX3P1 Gene

No data available for Paralogs for CBX3P1 Gene

Variants for CBX3P1 Gene

Additional Variant Information for CBX3P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CBX3P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CBX3P1 Gene

Disorders for CBX3P1 Gene

Additional Disease Information for CBX3P1

Genetic Association Database
(GAD)

No disorders were found for CBX3P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CBX3P1 Gene

Publications for CBX3P1 Gene

  1. Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness. (PMID: 17903302) Levy D … Mitchell GF (BMC medical genetics 2007) 44 58
  2. A human HP1 pseudogene maps to chromosome 11p14. (PMID: 10763413) Park A … Worman HJ (Somatic cell and molecular genetics 1998) 3 58

Products for CBX3P1 Gene

Sources for CBX3P1 Gene

Content
Loading form....