Aliases for CBX1P3 Gene

Aliases for CBX1P3 Gene

  • Chromobox 1 Pseudogene 3 2 3 5
  • Chromobox Homolog 1 Pseudogene 3 2 3
  • Chromobox Homolog 1 (HP1 Beta Homolog Drosophila ) Pseudogene 3

External Ids for CBX1P3 Gene

Previous GeneCards Identifiers for CBX1P3 Gene

  • GC01P175089

Summaries for CBX1P3 Gene

GeneCards Summary for CBX1P3 Gene

CBX1P3 (Chromobox 1 Pseudogene 3) is a Pseudogene.

Additional gene information for CBX1P3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CBX1P3 Gene

Genomics for CBX1P3 Gene

GeneHancer (GH) Regulatory Elements for CBX1P3 Gene

Promoters and enhancers for CBX1P3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J203953 Enhancer 0.7 Ensembl 750.6 +1.5 1503 3.8 SMARCE1 TEAD4 CBFA2T2 PPARG TRIM24 IKZF1 CEBPA HDAC1 SOX13 SOX6 CBX1P3 lnc-SNRPE-3 NFASC PRELP ZC3H11A SNRPE ENSG00000286383
GH01J203954 Enhancer 0.3 Ensembl 750.6 -1.0 -997 0.4 ZNF133 CBX1P3 lnc-SNRPE-3 ZC3H11A PRELP piR-43097-007
GH01J203925 Enhancer 1 Ensembl ENCODE 0.3 -27.8 -27829 1.6 SMARCE1 ZNF148 SMARCA4 MCM2 TRIM24 DPF2 GTF2E2 ZNF512 PKNOX1 CEBPB SNRPE ZC3H11A ZBED6 SOX13 MDM4 piR-43097-007 CBX1P3
GH01J203929 Enhancer 0.7 Ensembl 0.3 -24.1 -24067 1.3 GATA3 SREBF1 TCF7L2 ZNF217 MTA3 NCOA3 PRDM1 CEBPG CREB1 GATAD2B ZC3H11A SNRPE piR-43097-007 CBX1P3
GH01J203932 Enhancer 0.5 Ensembl 0.3 -21.8 -21834 1.3 SREBF1 ESRRA DPF2 ELK1 GATA3 FOXA1 SNRPE piR-43097-007 CBX1P3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CBX1P3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CBX1P3 Gene

Genomic Locations for CBX1P3 Gene
chr1:203,954,398-203,958,029
(GRCh38/hg38)
Size:
3,632 bases
Orientation:
Plus strand
chr1:203,923,526-203,927,157
(GRCh37/hg19)
Size:
3,632 bases
Orientation:
Plus strand

Genomic View for CBX1P3 Gene

Genes around CBX1P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CBX1P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CBX1P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CBX1P3 Gene

Proteins for CBX1P3 Gene

Post-translational modifications for CBX1P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CBX1P3 Gene

Domains & Families for CBX1P3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CBX1P3 Gene

Function for CBX1P3 Gene

Phenotypes From GWAS Catalog for CBX1P3 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CBX1P3 Gene

Localization for CBX1P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CBX1P3 Gene

Pathways & Interactions for CBX1P3 Gene

PathCards logo

SuperPathways for CBX1P3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CBX1P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CBX1P3 Gene

Drugs & Compounds for CBX1P3 Gene

No Compound Related Data Available

Transcripts for CBX1P3 Gene

mRNA/cDNA for CBX1P3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CBX1P3 Gene

No ASD Table

Relevant External Links for CBX1P3 Gene

GeneLoc Exon Structure for
CBX1P3
ECgene alternative splicing isoforms for
CBX1P3

Expression for CBX1P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CBX1P3 Gene

NURSA nuclear receptor signaling pathways regulating expression of CBX1P3 Gene:

CBX1P3
genes like me logo Genes that share expression patterns with CBX1P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CBX1P3 Gene

Orthologs for CBX1P3 Gene

Evolution for CBX1P3 Gene

ENSEMBL:
Gene Tree for CBX1P3 (if available)
TreeFam:
Gene Tree for CBX1P3 (if available)

No data available for Orthologs for CBX1P3 Gene

Paralogs for CBX1P3 Gene

No data available for Paralogs for CBX1P3 Gene

Variants for CBX1P3 Gene

Additional Variant Information for CBX1P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CBX1P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CBX1P3 Gene

Disorders for CBX1P3 Gene

No disorders were found for CBX1P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CBX1P3 Gene

Publications for CBX1P3 Gene

No publications were found for CBX1P3 Gene.

No data available for External Links for CBX1P3 Gene

Products for CBX1P3 Gene

Sources for CBX1P3 Gene