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Aliases for CATIP-AS2 Gene

Subcategory (RNA class) for CATIP-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CATIP-AS2 Gene

  • CATIP Antisense RNA 2 2 3 5

External Ids for CATIP-AS2 Gene

Previous GeneCards Identifiers for CATIP-AS2 Gene

  • GC00U936141

Summaries for CATIP-AS2 Gene

GeneCards Summary for CATIP-AS2 Gene

CATIP-AS2 (CATIP Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CATIP-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CATIP-AS2 Gene

Genomics for CATIP-AS2 Gene

GeneHancer (GH) Regulatory Elements for CATIP-AS2 Gene

Promoters and enhancers for CATIP-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I218356 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 550.8 +0.9 878 1.8 ELF3 PKNOX1 ARID4B SIN3A BMI1 ZNF48 RAD21 SCRT2 CREM THAP11 CATIP CATIP-AS2 GC02M218355 ENSG00000261338 TMBIM1 PNKD AAMP SLC11A1
GH02I218359 Enhancer 1 Ensembl ENCODE 0.8 -3.9 -3933 5 HDAC1 FOXA2 TCF12 ZNF766 EGR1 SCRT2 ATF7 EGR2 CEBPB REST CATIP ENSG00000261338 PNKD CATIP-AS2 CATIP-AS1 GC02M218358
GH02I218354 Enhancer 0.8 ENCODE 0.8 +2.8 2799 0.5 MLX ARID4B ZNF48 RARA CREM THAP11 SP5 PPARG KAT8 RAD51 CATIP GC02M218355 RPL19P5 PNKD TMBIM1 AAMP SLC11A1 CFAP65 CATIP-AS2
GH02I218331 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +24.9 24881 3.4 HDGF PKNOX1 ATF1 FOXA2 ARNT NCOA2 TCF12 POLR2B GATA2 ATF7 ENSG00000261338 PNKD SLC11A1 AAMP CYP27A1 GPBAR1 ARPC2 TMBIM1 CXCR2 MIR6810
GH02I218329 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +27.8 27796 2.2 HDGF PKNOX1 EBF1 RELA GLIS2 POLR2A ZNF207 ZNF143 BCLAF1 IKZF2 ENSG00000261338 SLC11A1 PNKD AAMP CXCR2 ARPC2 USP37 CXCR1 TTLL4 CNOT9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CATIP-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CATIP-AS2 Gene

Genomic Locations for CATIP-AS2 Gene
chr2:218,326,241-218,357,966
(GRCh38/hg38)
Size:
31,726 bases
Orientation:
Minus strand

Genomic View for CATIP-AS2 Gene

Genes around CATIP-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CATIP-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CATIP-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CATIP-AS2 Gene

Proteins for CATIP-AS2 Gene

Post-translational modifications for CATIP-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CATIP-AS2 Gene

Domains & Families for CATIP-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CATIP-AS2 Gene

Function for CATIP-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CATIP-AS2 Gene

Localization for CATIP-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CATIP-AS2 Gene

Pathways & Interactions for CATIP-AS2 Gene

SuperPathways for CATIP-AS2 Gene

No Data Available

Interacting Proteins for CATIP-AS2 Gene

Gene Ontology (GO) - Biological Process for CATIP-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CATIP-AS2 Gene

Drugs & Compounds for CATIP-AS2 Gene

No Compound Related Data Available

Transcripts for CATIP-AS2 Gene

mRNA/cDNA for CATIP-AS2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CATIP-AS2 Gene

No ASD Table

Relevant External Links for CATIP-AS2 Gene

GeneLoc Exon Structure for
CATIP-AS2
ECgene alternative splicing isoforms for
CATIP-AS2

Expression for CATIP-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CATIP-AS2 Gene

genes like me logo Genes that share expression patterns with CATIP-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CATIP-AS2 Gene

Orthologs for CATIP-AS2 Gene

Evolution for CATIP-AS2 Gene

ENSEMBL:
Gene Tree for CATIP-AS2 (if available)
TreeFam:
Gene Tree for CATIP-AS2 (if available)

No data available for Orthologs for CATIP-AS2 Gene

Paralogs for CATIP-AS2 Gene

No data available for Paralogs for CATIP-AS2 Gene

Variants for CATIP-AS2 Gene

Sequence variations from dbSNP and Humsavar for CATIP-AS2 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1002252129 uncertain-significance, Paroxysmal choreoathetosis 218,345,187(-) C/T intron_variant
rs1052578 benign, Paroxysmal choreoathetosis 218,345,883(-) T/A/C intron_variant
rs115429065 likely-benign, Paroxysmal choreoathetosis 218,345,973(-) C/G intron_variant
rs116144189 benign, Paroxysmal choreoathetosis 218,344,525(-) G/A intron_variant
rs139122042 likely-benign, Paroxysmal choreoathetosis 218,341,606(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CATIP-AS2 Gene

Variant ID Type Subtype PubMed ID
esv2763102 CNV loss 21179565
esv3594336 CNV gain 21293372
nsv519829 CNV loss 19592680
nsv961563 CNV duplication 23825009

Additional Variant Information for CATIP-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CATIP-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CATIP-AS2 Gene

Disorders for CATIP-AS2 Gene

Additional Disease Information for CATIP-AS2

No disorders were found for CATIP-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CATIP-AS2 Gene

Publications for CATIP-AS2 Gene

  1. Expressed sequence tag analysis of adult human iris for the NEIBank Project: steroid-response factors and similarities with retinal pigment epithelium. (PMID: 12107412) Wistow G … Peterson K (Molecular vision 2002) 3 58

Products for CATIP-AS2 Gene

Sources for CATIP-AS2 Gene

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