Aliases for CATIP-AS1 Gene

Data sources for CATIP-AS1 Gene:

RNA type for CATIP-AS1 Gene

lncRNA

Aliases for CATIP-AS1 Gene

External Ids for CATIP-AS1 Gene

Previous GeneCards Identifiers for CATIP-AS1 Gene

  • GC02M219232

Summaries for CATIP-AS1 Gene

GeneCards Summary for CATIP-AS1 Gene

CATIP-AS1 (CATIP Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CATIP-AS1 include Retinitis Pigmentosa.

Additional gene information for CATIP-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CATIP-AS1 Gene

Genomics for CATIP-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CATIP-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CATIP-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CATIP-AS1 Gene

Latest Assembly
chr2:218,366,605-218,367,902
(GRCh38/hg38)
Size:
1,298 bases
Orientation:
Minus strand

Previous Assembly
chr2:219,231,388-219,232,625
(GRCh37/hg19 by Entrez Gene)
Size:
1,238 bases
Orientation:
Minus strand

chr2:219,231,388-219,232,558
(GRCh37/hg19 by Ensembl)
Size:
1,171 bases
Orientation:
Minus strand

Genomic View for CATIP-AS1 Gene

Genes around CATIP-AS1 on UCSC Golden Path with GeneCards custom track
CATIP-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
CATIP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CATIP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CATIP-AS1 Gene

Proteins for CATIP-AS1 Gene

Post-translational modifications for CATIP-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CATIP-AS1 Gene

Domains & Families for CATIP-AS1 Gene

Gene Families for CATIP-AS1 Gene

genes like me logo Genes that share domains with CATIP-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CATIP-AS1 Gene

Function for CATIP-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CATIP-AS1 Gene

Localization for CATIP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CATIP-AS1 Gene

Pathways & Interactions for CATIP-AS1 Gene

PathCards logo

SuperPathways for CATIP-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CATIP-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CATIP-AS1 Gene

Drugs & Compounds for CATIP-AS1 Gene

No Compound Related Data Available

Transcripts for CATIP-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CATIP-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000075D700_9606 lncRNA 547 3

RefSeq: NR_110573,

LncBook: HSALNT0047280,

LNCipedia: CATIP-AS1:1,

URS00009B732B_9606 lncRNA 480 3

Ensembl: ENST00000441749 (view in UCSC) ,

LNCipedia: CATIP-AS1:2,

NONCODE: NONHSAT076910.2,

URS00009C411D_9606 lncRNA 775 2

LncBook: HSALNT0047279,

NONCODE: NONHSAT186314.1,

URS0000D5924F_9606 lncRNA 637 2

LncBook: HSALNT0047277,

LNCipedia: CATIP-AS1:15,

URS0000D5DD01_9606 lncRNA 560 2

LncBook: HSALNT0047278,

LNCipedia: CATIP-AS1:13,

CATIP-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CATIP-AS1 Gene

3 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CATIP-AS1 Gene

No ASD Table

Relevant External Links for CATIP-AS1 Gene

GeneLoc Exon Structure for
CATIP-AS1

Expression for CATIP-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CATIP-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CATIP-AS1 Gene

This gene is overexpressed in Whole Blood (x14.6).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CATIP-AS1

genes like me logo Genes that share expression patterns with CATIP-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CATIP-AS1 Gene

Orthologs for CATIP-AS1 Gene

Evolution for CATIP-AS1 Gene

ENSEMBL:
Gene Tree for CATIP-AS1 (if available)
TreeFam:
Gene Tree for CATIP-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for CATIP-AS1

No data available for Orthologs for CATIP-AS1 Gene

Paralogs for CATIP-AS1 Gene

No data available for Paralogs for CATIP-AS1 Gene

Variants for CATIP-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for CATIP-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for CATIP-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2763102 CNV loss 21179565
nsv519829 CNV loss 19592680

Additional Variant Information for CATIP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CATIP-AS1
Leiden Open Variation Database (LOVD)
CATIP-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CATIP-AS1 Gene

Disorders for CATIP-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CATIP-AS1 Gene - From: COP

Disorder Aliases PubMed IDs
retinitis pigmentosa
  • rp
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for CATIP-AS1

genes like me logo Genes that share disorders with CATIP-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CATIP-AS1 Gene

Publications for CATIP-AS1 Gene

No publications were found for CATIP-AS1 Gene.

Products for CATIP-AS1 Gene

Sources for CATIP-AS1 Gene