Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CATIP-AS1 Gene

Subcategory (RNA class) for CATIP-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CATIP-AS1 Gene

  • CATIP Antisense RNA 1 2 3 5

External Ids for CATIP-AS1 Gene

Previous GeneCards Identifiers for CATIP-AS1 Gene

  • GC02M219232

Summaries for CATIP-AS1 Gene

GeneCards Summary for CATIP-AS1 Gene

CATIP-AS1 (CATIP Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CATIP-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CATIP-AS1 Gene

Genomics for CATIP-AS1 Gene

GeneHancer (GH) Regulatory Elements for CATIP-AS1 Gene

Promoters and enhancers for CATIP-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CATIP-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CATIP-AS1 Gene

Genomic Locations for CATIP-AS1 Gene
chr2:218,366,665-218,367,902
(GRCh38/hg38)
Size:
1,238 bases
Orientation:
Minus strand
chr2:219,231,388-219,232,558
(GRCh37/hg19)
Size:
1,171 bases
Orientation:
Minus strand

Genomic View for CATIP-AS1 Gene

Genes around CATIP-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CATIP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CATIP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CATIP-AS1 Gene

Proteins for CATIP-AS1 Gene

Post-translational modifications for CATIP-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CATIP-AS1 Gene

Domains & Families for CATIP-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CATIP-AS1 Gene

Function for CATIP-AS1 Gene

Phenotypes From GWAS Catalog for CATIP-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CATIP-AS1 Gene

Localization for CATIP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CATIP-AS1 Gene

Pathways & Interactions for CATIP-AS1 Gene

PathCards logo

SuperPathways for CATIP-AS1 Gene

No Data Available

Interacting Proteins for CATIP-AS1 Gene

Gene Ontology (GO) - Biological Process for CATIP-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CATIP-AS1 Gene

Drugs & Compounds for CATIP-AS1 Gene

No Compound Related Data Available

Transcripts for CATIP-AS1 Gene

mRNA/cDNA for CATIP-AS1 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CATIP-AS1 Gene

No ASD Table

Relevant External Links for CATIP-AS1 Gene

GeneLoc Exon Structure for
CATIP-AS1
ECgene alternative splicing isoforms for
CATIP-AS1

Expression for CATIP-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CATIP-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CATIP-AS1 Gene

This gene is overexpressed in Whole Blood (x14.6).
genes like me logo Genes that share expression patterns with CATIP-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CATIP-AS1 Gene

Orthologs for CATIP-AS1 Gene

Evolution for CATIP-AS1 Gene

ENSEMBL:
Gene Tree for CATIP-AS1 (if available)
TreeFam:
Gene Tree for CATIP-AS1 (if available)

No data available for Orthologs for CATIP-AS1 Gene

Paralogs for CATIP-AS1 Gene

No data available for Paralogs for CATIP-AS1 Gene

Variants for CATIP-AS1 Gene

Sequence variations from dbSNP and Humsavar for CATIP-AS1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000097055 -- 218,366,957(-) A/G non_coding_transcript_variant
rs1000149248 -- 218,367,349(-) T/C intron_variant
rs1000421726 -- 218,369,585(-) G/A upstream_transcript_variant
rs1001794094 -- 218,368,305(-) C/T upstream_transcript_variant
rs1001869450 -- 218,366,429(-) G/A downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CATIP-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2763102 CNV loss 21179565
nsv519829 CNV loss 19592680

Additional Variant Information for CATIP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CATIP-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CATIP-AS1 Gene

Disorders for CATIP-AS1 Gene

Additional Disease Information for CATIP-AS1

No disorders were found for CATIP-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CATIP-AS1 Gene

Publications for CATIP-AS1 Gene

No publications were found for CATIP-AS1 Gene.

Products for CATIP-AS1 Gene

Sources for CATIP-AS1 Gene

Content
Loading form....