Aliases for CASK-AS1 Gene

Subcategory (RNA class) for CASK-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for CASK-AS1 Gene

  • CASK Antisense RNA 1 2 3 5
  • CASK-AS1 2 5 165
  • CASK Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG054304.2 91
  • HSALNG0137482 164

External Ids for CASK-AS1 Gene

Previous GeneCards Identifiers for CASK-AS1 Gene

  • GC00U933152
  • GC0XP041380

Summaries for CASK-AS1 Gene

GeneCards Summary for CASK-AS1 Gene

CASK-AS1 (CASK Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CASK-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CASK-AS1 Gene

Genomics for CASK-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CASK-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ041519 Enhancer 0.5 UCNEbase Ensembl 600.7 +0.3 256 0.6 CASK-AS1 lnc-MED14-6 RF00026-1158 RNU6-1321P NYX GPR34 CASK
GH0XJ041329 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 45.1 -185.4 -185430 9.6 BRCA1 RNF2 ARHGAP35 SP1 CREB1 HNRNPL TEAD4 PRDM10 ZNF629 REST DDX3X LOC107985678 LOC105373184 NONHSAG054300.2 lnc-CASK-8 CASK-AS1 CXorf38 MED14 USP9X NYX
GH0XJ041520 Enhancer 0.2 Ensembl 600.7 +0.9 865 0.2 CASK-AS1 RF00026-1158 RNU6-1321P NYX GPR34 CASK
GH0XJ041083 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 38.2 -432.7 -432735 7.8 ZNF221 SP1 CREB1 ATF7 PRDM10 REST ZNF629 TFE3 LEF1 ZNF692 USP9X CASK-AS1 BCOR DDX3X MED14 CXorf38 lnc-MED14-10 RF00017-8317
GH0XJ040727 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 10.1 -787.7 -787735 10.6 SP1 CREB1 CTCF PRDM10 REST ZNF629 ZNF692 POLR2A BACH1 JUND MED14 lnc-CXorf38-3 MED14OS CXorf38 BCOR CASK-AS1 USP9X lnc-MPC1L-14 lnc-CXorf38-4 RF00017-8309
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CASK-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CASK-AS1 Gene

Genomic Locations for CASK-AS1 Gene
chrX:41,520,036-41,522,336
(GRCh38/hg38)
Size:
2,301 bases
Orientation:
Plus strand
chrX:41,379,289-41,381,589
(GRCh37/hg19)
Size:
2,301 bases
Orientation:
Plus strand

Genomic View for CASK-AS1 Gene

Genes around CASK-AS1 on UCSC Golden Path with GeneCards custom track
CASK-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
CASK-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CASK-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for CASK-AS1 Gene

Proteins for CASK-AS1 Gene

Post-translational modifications for CASK-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CASK-AS1 Gene

Domains & Families for CASK-AS1 Gene

Gene Families for CASK-AS1 Gene

genes like me logo Genes that share domains with CASK-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CASK-AS1 Gene

Function for CASK-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CASK-AS1 Gene

Localization for CASK-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CASK-AS1 Gene

Pathways & Interactions for CASK-AS1 Gene

PathCards logo

SuperPathways for CASK-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CASK-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CASK-AS1 Gene

Drugs & Compounds for CASK-AS1 Gene

No Compound Related Data Available

Transcripts for CASK-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CASK-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000048FDBF_9606 lncRNA 515 5

HGNC: 40126,

Ensembl: ENST00000451126 (view in UCSC) ,

LncBook: HSALNT0281858,

LNCipedia: CASK-AS1:1,

NONCODE: NONHSAT136738.2,

CASK-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CASK-AS1 Gene

2 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CASK-AS1 Gene

No ASD Table

Relevant External Links for CASK-AS1 Gene

GeneLoc Exon Structure for
CASK-AS1

Expression for CASK-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CASK-AS1 Gene

genes like me logo Genes that share expression patterns with CASK-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CASK-AS1 Gene

Orthologs for CASK-AS1 Gene

Evolution for CASK-AS1 Gene

ENSEMBL:
Gene Tree for CASK-AS1 (if available)
TreeFam:
Gene Tree for CASK-AS1 (if available)

No data available for Orthologs for CASK-AS1 Gene

Paralogs for CASK-AS1 Gene

No data available for Paralogs for CASK-AS1 Gene

Variants for CASK-AS1 Gene

Additional Variant Information for CASK-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CASK-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CASK-AS1 Gene

Disorders for CASK-AS1 Gene

Additional Disease Information for CASK-AS1

No disorders were found for CASK-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CASK-AS1 Gene

Publications for CASK-AS1 Gene

No publications were found for CASK-AS1 Gene.

No data available for Mastermind for CASK-AS1 Gene

Products for CASK-AS1 Gene

Sources for CASK-AS1 Gene