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Aliases for CASC6 Gene

Subcategory (RNA class) for CASC6 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for CASC6 Gene

  • Cancer Susceptibility 6 2 3
  • Cancer Susceptibility 6 (Non-Protein Coding) 2 3 5
  • Cancer Susceptibility Candidate 6 (Non-Protein Coding) 2 3

External Ids for CASC6 Gene

Previous GeneCards Identifiers for CASC6 Gene

  • GC06M092340

Summaries for CASC6 Gene

GeneCards Summary for CASC6 Gene

CASC6 (Cancer Susceptibility 6) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CASC6 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CASC6 Gene

Genomics for CASC6 Gene

GeneHancer (GH) Regulatory Elements for CASC6 Gene

Promoters and enhancers for CASC6 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J091694 Enhancer 0.4 ENCODE 0.7 -3.7 -3730 0.2 POLR3A FOS TCF7L2 CASC6 LOC105377894
GH06J091697 Enhancer 0.6 ENCODE 0.4 -7.1 -7080 0 JUN JUNB CEBPB DPF2 CEBPG EP300 FOXA1 JUND STAT3 FOS CASC6 LOC105377894
GH06J091669 Enhancer 0.6 Ensembl ENCODE 0.3 +20.7 20651 1.1 POLR2A CREB1 GC06P091655 CASC6
GH06J091653 Enhancer 0.6 ENCODE 0.3 +35.9 35940 1.2 SCRT1 RXRA SIN3A REST RAD21 YY1 SP1 POLR2A HNF4A GC06P091655 CASC6 MIR4643
GH06J091704 Enhancer 0.4 ENCODE 0.4 -14.3 -14340 0.2 JUN FOS LOC105377894 CASC6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CASC6 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CASC6 Gene

Genomic Locations for CASC6 Gene
61,389 bases
Minus strand
60,514 bases
Minus strand

Genomic View for CASC6 Gene

Genes around CASC6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CASC6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CASC6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CASC6 Gene

Function for CASC6 Gene

Phenotypes From GWAS Catalog for CASC6 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CASC6 Gene

Localization for CASC6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CASC6 Gene

Pathways & Interactions for CASC6 Gene

SuperPathways for CASC6 Gene

No Data Available

Interacting Proteins for CASC6 Gene

Gene Ontology (GO) - Biological Process for CASC6 Gene


No data available for Pathways by source and SIGNOR curated interactions for CASC6 Gene

Drugs & Compounds for CASC6 Gene

No Compound Related Data Available

Transcripts for CASC6 Gene

mRNA/cDNA for CASC6 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CASC6 Gene

No ASD Table

Relevant External Links for CASC6 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CASC6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CASC6 Gene

mRNA differential expression in normal tissues according to GTEx for CASC6 Gene

This gene is overexpressed in Brain - Hippocampus (x44.1).

NURSA nuclear receptor signaling pathways regulating expression of CASC6 Gene:

genes like me logo Genes that share expression patterns with CASC6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CASC6 Gene

Orthologs for CASC6 Gene

Evolution for CASC6 Gene

Gene Tree for CASC6 (if available)
Gene Tree for CASC6 (if available)

No data available for Orthologs for CASC6 Gene

Paralogs for CASC6 Gene

No data available for Paralogs for CASC6 Gene

Variants for CASC6 Gene

Sequence variations from dbSNP and Humsavar for CASC6 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000051393 -- 91,657,447(-) G/C intron_variant
rs1000063615 -- 91,635,904(-) T/A intron_variant
rs1000085061 -- 91,657,662(-) T/C intron_variant
rs1000163200 -- 91,677,573(-) A/G intron_variant
rs1000268500 -- 91,669,706(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CASC6 Gene

Variant ID Type Subtype PubMed ID
esv2671229 CNV deletion 23128226
esv2732423 CNV deletion 23290073
esv3609942 CNV loss 21293372
esv3609943 CNV loss 21293372
esv3890905 CNV gain 25118596
nsv1018145 CNV gain 25217958
nsv1028736 CNV loss 25217958
nsv1032777 CNV loss 25217958
nsv1034981 CNV gain 25217958
nsv517922 CNV gain 19592680
nsv521262 CNV loss 19592680
nsv823773 CNV loss 20364138

Additional Variant Information for CASC6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CASC6 Gene

Disorders for CASC6 Gene

Additional Disease Information for CASC6

No disorders were found for CASC6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CASC6 Gene

Publications for CASC6 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for CASC6 Gene

Sources for CASC6 Gene

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