Aliases for CASC23 Gene

Subcategory (RNA class) for CASC23 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for CASC23 Gene

  • Cancer Susceptibility 23 2 3 5
  • Cancer Susceptibility Candidate 23 (Non-Protein Coding) 2 3
  • Cancer Susceptibility 23 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 1464 2 3
  • CASC23 2 168
  • HSALNG0082526 167
  • NONHSAG007577 92
  • LINC01464 3

External Ids for CASC23 Gene

Summaries for CASC23 Gene

GeneCards Summary for CASC23 Gene

CASC23 (Cancer Susceptibility 23) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CASC23 include Kabuki Syndrome 1.

Additional gene information for CASC23 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CASC23 Gene

Genomics for CASC23 Gene

GeneHancer (GH) Regulatory Elements for CASC23 Gene

Promoters and enhancers for CASC23 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J008016 Enhancer 0.6 Ensembl ENCODE 500.7 +0.3 319 1.2 YY1 JUND SIN3A POU5F1 CASC23 lnc-TUB-2 TUB piR-39978
GH11J007985 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 11.5 +29.0 28991 3.3 RXRA ZBTB40 ZNF217 EP300 CTCF SIN3A TCF12 POLR2G USF1 SP1 EIF3F ZNF214 TMEM9B-AS1 CASC23 TUB SNORA3B ENSG00000254921 piR-34916-001 COX6CP5 lnc-TUB-5
GH11J008080 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 11.3 -65.4 -65443 3.8 EP300 USF1 TEAD4 ZBTB10 GABPA ZBTB26 RFX1 HDAC2 MXI1 KDM1A TUB CASC23 ENSG00000254921 ENSG00000251364 TRIM66 RIC3 ENSG00000279391 lnc-RIC3-2 piR-30184
GH11J008204 Promoter/Enhancer 1.9 VISTA EPDnew ENCODE CraniofacialAtlas dbSUPER 9.5 -190.3 -190298 4.6 NRF1 PHB2 ZNF263 ZBTB11 TARDBP REST HES1 MYC CTBP1 MXI1 RIC3 RIC3-DT TUB CASC23 EIF3F lnc-LMO1-2
GH11J008067 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 11.5 -52.4 -52381 2.6 ZIC2 REST CTBP1 RBM25 NR2F2 NFIC ZBTB17 FOS PBX2 CHD2 TUB ENSG00000254921 CASC23 ENSG00000279391 TUB-AS1 lnc-RIC3-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CASC23 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CASC23 Gene

Genomic Locations for CASC23 Gene
chr11:8,011,278-8,016,520
(GRCh38/hg38)
Size:
5,243 bases
Orientation:
Minus strand
chr11:8,032,825-8,038,036
(GRCh37/hg19)
Size:
5,212 bases
Orientation:
Minus strand

Genomic View for CASC23 Gene

Genes around CASC23 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CASC23 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CASC23 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CASC23 Gene

Proteins for CASC23 Gene

Post-translational modifications for CASC23 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CASC23 Gene

Domains & Families for CASC23 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CASC23 Gene

Function for CASC23 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CASC23 Gene

Localization for CASC23 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CASC23 Gene

Pathways & Interactions for CASC23 Gene

PathCards logo

SuperPathways for CASC23 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for CASC23 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CASC23 Gene

Drugs & Compounds for CASC23 Gene

No Compound Related Data Available

Transcripts for CASC23 Gene

mRNA/cDNA for CASC23 Gene

7 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
4 LncBook transcripts :
5 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CASC23 Gene

No ASD Table

Relevant External Links for CASC23 Gene

GeneLoc Exon Structure for
CASC23

Expression for CASC23 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CASC23 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CASC23

genes like me logo Genes that share expression patterns with CASC23: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CASC23 Gene

Orthologs for CASC23 Gene

Evolution for CASC23 Gene

ENSEMBL:
Gene Tree for CASC23 (if available)
TreeFam:
Gene Tree for CASC23 (if available)

No data available for Orthologs for CASC23 Gene

Paralogs for CASC23 Gene

No data available for Paralogs for CASC23 Gene

Variants for CASC23 Gene

Additional dbSNP identifiers (rs#s) for CASC23 Gene

Structural Variations from Database of Genomic Variants (DGV) for CASC23 Gene

Variant ID Type Subtype PubMed ID
nsv499766 OTHER inversion 21111241
nsv7215 OTHER inversion 18451855

Additional Variant Information for CASC23 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CASC23

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CASC23 Gene

Disorders for CASC23 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CASC23 Gene - From: DISEASES

Disorder Aliases PubMed IDs
kabuki syndrome 1
  • kms
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for CASC23

genes like me logo Genes that share disorders with CASC23: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CASC23 Gene

Publications for CASC23 Gene

No publications were found for CASC23 Gene.

Products for CASC23 Gene

Sources for CASC23 Gene