Aliases for CASC23 Gene

Subcategory (RNA class) for CASC23 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for CASC23 Gene

  • Cancer Susceptibility 23 2 3 5
  • CASC23 2 5 165
  • Cancer Susceptibility Candidate 23 (Non-Protein Coding) 2 3
  • Cancer Susceptibility 23 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 1464 2 3
  • LINC01464 2 3
  • NONHSAG007577.2 91
  • HSALNG0082526 164

External Ids for CASC23 Gene

Summaries for CASC23 Gene

GeneCards Summary for CASC23 Gene

CASC23 (Cancer Susceptibility 23) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CASC23 include Kabuki Syndrome 1.

Additional gene information for CASC23 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CASC23 Gene

Genomics for CASC23 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CASC23 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J008016 Promoter/Enhancer 0.9 EPDnew Ensembl ENCODE 600.7 +0.3 319 1.2 YY1 JUND SIN3A POU5F1 CASC23 lnc-TUB-2 TUB piR-39978 EIF3F
GH11J007985 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 11.5 +29.0 28991 3.3 SP1 CREB1 GATAD2A CTCF TEAD4 PRDM10 ZNF629 SIX5 LEF1 IKZF1 EIF3F OLFML1 SNORA3B TMEM9B-AS1 RPL27A DENND2B CASC23 TUB ENSG00000254921 ZNF214
GH11J008080 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 11.3 -65.4 -65443 3.8 TEAD4 RFX1 KDM1A POLR2A PATZ1 ZNF501 EZH2 ZNF600 ZBTB20 SP2 TUB CASC23 ENSG00000254921 ENSG00000251364 TRIM66 RIC3 ENSG00000279391 lnc-RIC3-2 piR-30184
GH11J008204 Promoter/Enhancer 1.9 VISTA EPDnew ENCODE CraniofacialAtlas dbSUPER 9.5 -190.3 -190298 4.6 LEF1 DDX20 MTA2 PHF21A PKNOX1 ZNF24 MTA1 REST CTCF DPF2 RIC3 RIC3-DT TUB CASC23 EIF3F lnc-LMO1-2 LMO1
GH11J008067 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 11.5 -52.4 -52381 2.6 PRDM10 ZNF512 IKZF1 JUND ZIC2 PKNOX1 SP1 ZBTB20 CTBP1 FOS TUB ENSG00000254921 CASC23 ENSG00000279391 TUB-AS1 lnc-RIC3-2 RIC3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CASC23 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CASC23 Gene

Genomic Locations for CASC23 Gene
chr11:8,011,278-8,016,520
(GRCh38/hg38)
Size:
5,243 bases
Orientation:
Minus strand
chr11:8,032,825-8,038,036
(GRCh37/hg19)
Size:
5,212 bases
Orientation:
Minus strand

Genomic View for CASC23 Gene

Genes around CASC23 on UCSC Golden Path with GeneCards custom track
CASC23 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
CASC23 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CASC23 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CASC23 Gene

Proteins for CASC23 Gene

Post-translational modifications for CASC23 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CASC23 Gene

Domains & Families for CASC23 Gene

Gene Families for CASC23 Gene

genes like me logo Genes that share domains with CASC23: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CASC23 Gene

Function for CASC23 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CASC23 Gene

Localization for CASC23 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CASC23 Gene

Pathways & Interactions for CASC23 Gene

PathCards logo

SuperPathways for CASC23 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CASC23 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CASC23 Gene

Drugs & Compounds for CASC23 Gene

No Compound Related Data Available

Transcripts for CASC23 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CASC23 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007E4DDF_9606 lncRNA 1583 3

HGNC: 50865,

RefSeq: NR_125366,

LNCipedia: CASC23:1,

URS0000EF294B_9606 lncRNA 1594 1

Ensembl: ENST00000534076 (view in UCSC) ,

URS00003891EF_9606 lncRNA 1563 3

LncBook: HSALNT0171704,

LNCipedia: CASC23:4,

NONCODE: NONHSAT017817.2,

URS00008BCC38_9606 lncRNA 605 3

LncBook: HSALNT0171709,

LNCipedia: CASC23:2,

NONCODE: NONHSAT017818.2,

URS00008BCF82_9606 lncRNA 503 3

LncBook: HSALNT0171711,

LNCipedia: CASC23:5,

NONCODE: NONHSAT017819.2,

CASC23 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CASC23 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for CASC23 Gene

No ASD Table

Relevant External Links for CASC23 Gene

GeneLoc Exon Structure for
CASC23

Expression for CASC23 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CASC23 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CASC23

genes like me logo Genes that share expression patterns with CASC23: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CASC23 Gene

Orthologs for CASC23 Gene

Evolution for CASC23 Gene

ENSEMBL:
Gene Tree for CASC23 (if available)
TreeFam:
Gene Tree for CASC23 (if available)

No data available for Orthologs for CASC23 Gene

Paralogs for CASC23 Gene

No data available for Paralogs for CASC23 Gene

Variants for CASC23 Gene

Additional dbSNP identifiers (rs#s) for CASC23 Gene

Structural Variations from Database of Genomic Variants (DGV) for CASC23 Gene

Variant ID Type Subtype PubMed ID
nsv499766 OTHER inversion 21111241
nsv7215 OTHER inversion 18451855

Additional Variant Information for CASC23 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CASC23

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CASC23 Gene

Disorders for CASC23 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CASC23 Gene - From: DISEASES

Disorder Aliases PubMed IDs
kabuki syndrome 1
  • kms
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with CASC23: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CASC23 Gene

Publications for CASC23 Gene

No publications were found for CASC23 Gene.

Products for CASC23 Gene

Sources for CASC23 Gene