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Aliases for CASC21 Gene

Subcategory (RNA class) for CASC21 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CASC21 Gene

  • Cancer Susceptibility 21 2 3
  • Cancer Susceptibility Candidate 21 (Non-Protein Coding) 2 3
  • Cancer Susceptibility 21 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 1244 2 3
  • LINC01244 3
  • CARLo-2 3
  • CARLO2 3

External Ids for CASC21 Gene

Previous HGNC Symbols for CASC21 Gene

  • LINC01244

Previous GeneCards Identifiers for CASC21 Gene

  • GC08U901843
  • GC08P127340

Summaries for CASC21 Gene

GeneCards Summary for CASC21 Gene

CASC21 (Cancer Susceptibility 21) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CASC21 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CASC21 Gene

Genomics for CASC21 Gene

GeneHancer (GH) Regulatory Elements for CASC21 Gene

Promoters and enhancers for CASC21 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J127244 Enhancer 0.2 dbSUPER 650.7 -0.3 -284 0.3 CASC21 PCAT2 CASC19 PCAT1
GH08J127246 Enhancer 0.2 dbSUPER 650.7 +0.0 19 0.2 CASC21 ENSG00000271509 PCAT1
GH08J127245 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 0.7 +2.7 2697 3.6 SOX13 ZFP64 JUNB ZC3H11A ZNF781 ZNF518A ZNF697 NFE2 MAFK NFE2L2 SRRM1P1 MYC CASC21 ENSG00000271509 PCAT1
GH08J127241 Enhancer 0.6 FANTOM5 dbSUPER 0.7 -3.4 -3427 0.2 COPS2 ZFX CASC21 PCAT2 CASC19 PCAT1
GH08J127250 Enhancer 1 FANTOM5 ENCODE dbSUPER 0.4 +7.2 7197 2.2 HLF BACH1 JUNB BATF SP1 ZNF217 CREB1 MAFK SPI1 CASC21 ENSG00000271509 PCAT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CASC21 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CASC21 Gene

Genomic Locations for CASC21 Gene
chr8:127,244,637-127,392,631
(GRCh38/hg38)
Size:
147,995 bases
Orientation:
Plus strand

Genomic View for CASC21 Gene

Genes around CASC21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CASC21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CASC21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CASC21 Gene

Proteins for CASC21 Gene

Post-translational modifications for CASC21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CASC21 Gene

Domains & Families for CASC21 Gene

Gene Families for CASC21 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CASC21: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CASC21 Gene

Function for CASC21 Gene

Phenotypes From GWAS Catalog for CASC21 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CASC21 Gene

Localization for CASC21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CASC21 Gene

Pathways & Interactions for CASC21 Gene

SuperPathways for CASC21 Gene

No Data Available

Interacting Proteins for CASC21 Gene

Gene Ontology (GO) - Biological Process for CASC21 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CASC21 Gene

Drugs & Compounds for CASC21 Gene

No Compound Related Data Available

Transcripts for CASC21 Gene

mRNA/cDNA for CASC21 Gene

(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CASC21 Gene

No ASD Table

Relevant External Links for CASC21 Gene

GeneLoc Exon Structure for
CASC21
ECgene alternative splicing isoforms for
CASC21

Expression for CASC21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CASC21 Gene

NURSA nuclear receptor signaling pathways regulating expression of CASC21 Gene:

CASC21
genes like me logo Genes that share expression patterns with CASC21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CASC21 Gene

Orthologs for CASC21 Gene

No data available for Orthologs and Evolution for CASC21 Gene

Paralogs for CASC21 Gene

No data available for Paralogs for CASC21 Gene

Variants for CASC21 Gene

Sequence variations from dbSNP and Humsavar for CASC21 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000023795 -- 127,294,815(+) A/C/T intron_variant
rs1000032748 -- 127,339,738(+) C/T intron_variant
rs1000037278 -- 127,278,100(+) A/G intron_variant
rs1000055146 -- 127,295,151(+) G/T intron_variant
rs1000086463 -- 127,316,641(+) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CASC21 Gene

Variant ID Type Subtype PubMed ID
nsv951468 CNV duplication 24416366
nsv831457 CNV gain 17160897
nsv7419 OTHER inversion 18451855
nsv499795 OTHER inversion 21111241
nsv472662 CNV novel sequence insertion 20440878
nsv1126860 CNV deletion 24896259
esv3618771 CNV loss 21293372
esv3618770 CNV loss 21293372
esv3395895 CNV insertion 20981092
esv3392005 CNV insertion 20981092
esv3321908 CNV insertion 20981092
esv275357 CNV loss 21479260
esv2669237 CNV deletion 23128226
esv2109813 CNV deletion 18987734
esv1217766 CNV deletion 17803354

Additional Variant Information for CASC21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CASC21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CASC21 Gene

Disorders for CASC21 Gene

Additional Disease Information for CASC21

No disorders were found for CASC21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CASC21 Gene

Publications for CASC21 Gene

  1. Long-range interaction and correlation between MYC enhancer and oncogenic long noncoding RNA CARLo-5. (PMID: 24594601) Kim T … Croce CM (Proceedings of the National Academy of Sciences of the United States of America 2014) 2 3 58

Products for CASC21 Gene

Sources for CASC21 Gene

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