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Aliases for CASC20 Gene

Subcategory (RNA class) for CASC20 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CASC20 Gene

  • Cancer Susceptibility 20 2 3
  • Cancer Susceptibility 20 (Non-Protein Coding) 2 3 5
  • Cancer Susceptibility Candidate 20 (Non-Protein Coding) 2 3

External Ids for CASC20 Gene

Summaries for CASC20 Gene

GeneCards Summary for CASC20 Gene

CASC20 (Cancer Susceptibility 20) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CASC20 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CASC20 Gene

Genomics for CASC20 Gene

GeneHancer (GH) Regulatory Elements for CASC20 Gene

Promoters and enhancers for CASC20 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J006466 Enhancer 0.7 ENCODE 0.3 +39.8 39827 0.2 SOX13 FOXA2 ZNF644 RARA GATAD2A SOX5 TEAD1 FOXA3 CEBPB EP300 GC20M006439 CASC20 GC20M006571
GH20J006488 Enhancer 0.9 ENCODE 0.2 +64.7 64693 5.3 FOXA2 ARID4B DMAP1 ETS1 NFKBIZ SP5 MIER2 REST KAT8 NFIL3 GC20M006439 CASC20 GC20M006571
GH20J006519 Enhancer 0.5 ENCODE 0.2 +93.1 93103 0.9 JUND JUN FOS EP300 GC20M006571 GC20M006439 CASC20
GH20J006500 Enhancer 0.4 ENCODE 0.2 +74.5 74455 1 JUND JUN FOS GC20M006439 CASC20 GC20M006571
GH20J006495 Enhancer 0.2 ENCODE 0.2 +69.2 69181 0.9 GC20M006439 CASC20 GC20M006571
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CASC20 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CASC20 Gene

Genomic Locations for CASC20 Gene
chr20:6,426,732-6,528,459
(GRCh38/hg38)
Size:
101,728 bases
Orientation:
Plus strand
chr20:6,427,370-6,509,106
(GRCh37/hg19)
Size:
81,737 bases
Orientation:
Plus strand

Genomic View for CASC20 Gene

Genes around CASC20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CASC20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CASC20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CASC20 Gene

Function for CASC20 Gene

Phenotypes From GWAS Catalog for CASC20 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CASC20 Gene

Localization for CASC20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CASC20 Gene

Pathways & Interactions for CASC20 Gene

SuperPathways for CASC20 Gene

No Data Available

Interacting Proteins for CASC20 Gene

Gene Ontology (GO) - Biological Process for CASC20 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CASC20 Gene

Drugs & Compounds for CASC20 Gene

No Compound Related Data Available

Transcripts for CASC20 Gene

mRNA/cDNA for CASC20 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CASC20 Gene

No ASD Table

Relevant External Links for CASC20 Gene

GeneLoc Exon Structure for
CASC20
ECgene alternative splicing isoforms for
CASC20

Expression for CASC20 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CASC20 Gene

NURSA nuclear receptor signaling pathways regulating expression of CASC20 Gene:

CASC20
genes like me logo Genes that share expression patterns with CASC20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CASC20 Gene

Orthologs for CASC20 Gene

Evolution for CASC20 Gene

ENSEMBL:
Gene Tree for CASC20 (if available)
TreeFam:
Gene Tree for CASC20 (if available)

No data available for Orthologs for CASC20 Gene

Paralogs for CASC20 Gene

No data available for Paralogs for CASC20 Gene

Variants for CASC20 Gene

Sequence variations from dbSNP and Humsavar for CASC20 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000012041 -- 6,520,792(+) TTTTTT/TTTTTTT intron_variant
rs1000013202 -- 6,438,752(+) T/G intron_variant
rs1000022763 -- 6,513,214(+) A/C intron_variant
rs1000060134 -- 6,463,556(+) G/A intron_variant
rs1000116527 -- 6,444,736(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CASC20 Gene

Variant ID Type Subtype PubMed ID
nsv180600 CNV deletion 16902084
nsv1136500 CNV deletion 24896259
nsv1062796 CNV gain 25217958
nsv1058382 CNV gain 25217958
esv3556791 CNV deletion 23714750
esv2409065 CNV deletion 18987734
esv1510134 CNV deletion 17803354
dgv66n17 CNV loss 16327808
nsv979412 CNV duplication 23825009
nsv833908 CNV gain 17160897
nsv833907 CNV gain 17160897
nsv510482 OTHER sequence alteration 20534489
nsv438307 CNV loss 16468122
nsv3273 CNV insertion 18451855
nsv3272 CNV deletion 18451855

Additional Variant Information for CASC20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CASC20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CASC20 Gene

Disorders for CASC20 Gene

Additional Disease Information for CASC20

No disorders were found for CASC20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CASC20 Gene

Publications for CASC20 Gene

  1. Large-scale concatenation cDNA sequencing. (PMID: 9110174) Yu W … Gibbs RA (Genome research 1997) 3 58
  2. A "double adaptor" method for improved shotgun library construction. (PMID: 8619474) Andersson B … Gibbs RA (Analytical biochemistry 1996) 3 58

Products for CASC20 Gene

Sources for CASC20 Gene

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