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Aliases for CASC19 Gene

Subcategory (RNA class) for CASC19 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CASC19 Gene

  • Cancer Susceptibility 19 (Non-Protein Coding) 2 3 5
  • Cancer Susceptibility Candidate 19 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 1245 2 3
  • LINC01245 3
  • CARLo-6 3
  • CARLO6 3

External Ids for CASC19 Gene

Previous HGNC Symbols for CASC19 Gene

  • LINC01245

Previous GeneCards Identifiers for CASC19 Gene

  • GC00U935141
  • GC08M127185

Summaries for CASC19 Gene

GeneCards Summary for CASC19 Gene

CASC19 (Cancer Susceptibility 19 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CASC19 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CASC19 Gene

Genomics for CASC19 Gene

GeneHancer (GH) Regulatory Elements for CASC19 Gene

Promoters and enhancers for CASC19 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I127204 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +10.9 10885 24.9 HDGF PKNOX1 FOXA2 SMAD1 MLX ARID4B SIN3A DMAP1 YBX1 IRF4 CCAT1 PCAT2 CASC19 GC08P127149
GH08I127195 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +30.5 30508 3.5 HDGF SMAD1 RB1 BATF KLF5 IRF4 ZNF143 ATF7 ETV6 RCOR1 CCAT1 PCAT2 CASC19 GC08P127149
GH08I127183 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.3 +42.8 42846 1.4 PKNOX1 EBF1 BATF IRF4 RELA NFATC1 ATF7 ETV6 BCLAF1 IKZF2 CCAT1 GC08P127149 CASC19 PCAT2
GH08I127230 Enhancer 0.4 dbSUPER 0.8 -4.1 -4073 2.9 HLF RUNX3 CASC19 PCAT2 CASC21
GH08I127186 Enhancer 0.9 ENCODE dbSUPER 0.3 +39.0 39044 4.1 PKNOX1 SMAD1 EBF1 COPS2 RELA ZNF316 POLR2A ZNF207 ATF7 ETV6 CCAT1 CASC19 PCAT2 GC08P127149
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CASC19 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CASC19 Gene

Genomic Locations for CASC19 Gene
chr8:127,072,694-127,227,541
(GRCh38/hg38)
Size:
154,848 bases
Orientation:
Minus strand

Genomic View for CASC19 Gene

Genes around CASC19 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CASC19 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CASC19 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CASC19 Gene

Proteins for CASC19 Gene

Post-translational modifications for CASC19 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CASC19 Gene

Domains & Families for CASC19 Gene

Gene Families for CASC19 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CASC19: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CASC19 Gene

Function for CASC19 Gene

Phenotypes From GWAS Catalog for CASC19 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CASC19 Gene

Localization for CASC19 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CASC19 Gene

Pathways & Interactions for CASC19 Gene

SuperPathways for CASC19 Gene

No Data Available

Interacting Proteins for CASC19 Gene

Gene Ontology (GO) - Biological Process for CASC19 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CASC19 Gene

Drugs & Compounds for CASC19 Gene

No Compound Related Data Available

Transcripts for CASC19 Gene

mRNA/cDNA for CASC19 Gene

(84) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CASC19 Gene

No ASD Table

Relevant External Links for CASC19 Gene

GeneLoc Exon Structure for
CASC19
ECgene alternative splicing isoforms for
CASC19

Expression for CASC19 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CASC19 Gene

NURSA nuclear receptor signaling pathways regulating expression of CASC19 Gene:

CASC19
genes like me logo Genes that share expression patterns with CASC19: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CASC19 Gene

Orthologs for CASC19 Gene

Evolution for CASC19 Gene

ENSEMBL:
Gene Tree for CASC19 (if available)
TreeFam:
Gene Tree for CASC19 (if available)

No data available for Orthologs for CASC19 Gene

Paralogs for CASC19 Gene

No data available for Paralogs for CASC19 Gene

Variants for CASC19 Gene

Sequence variations from dbSNP and Humsavar for CASC19 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000352646 -- 127,198,272(-) G/A upstream_transcript_variant
rs1000467296 -- 127,195,362(-) G/A intron_variant
rs1000474225 -- 127,191,701(-) T/A intron_variant
rs1000490551 -- 127,191,494(-) T/C intron_variant
rs1000589729 -- 127,190,536(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CASC19 Gene

Variant ID Type Subtype PubMed ID
esv3303525 CNV mobile element insertion 20981092
esv3343374 CNV insertion 20981092
nsv499795 OTHER inversion 21111241
nsv508525 CNV deletion 20534489
nsv7419 OTHER inversion 18451855
nsv831457 CNV gain 17160897

Additional Variant Information for CASC19 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CASC19

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CASC19 Gene

Disorders for CASC19 Gene

Additional Disease Information for CASC19

No disorders were found for CASC19 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CASC19 Gene

Publications for CASC19 Gene

  1. Long-range interaction and correlation between MYC enhancer and oncogenic long noncoding RNA CARLo-5. (PMID: 24594601) Kim T … Croce CM (Proceedings of the National Academy of Sciences of the United States of America 2014) 2 3 58
  2. Genome-wide association of familial prostate cancer cases identifies evidence for a rare segregating haplotype at 8q24.21. (PMID: 27262462) Teerlink CC … Cannon-Albright L (Human genetics 2016) 3 58

Products for CASC19 Gene

Sources for CASC19 Gene

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