Aliases for CASC17 Gene

Data sources for CASC17 Gene:

Subcategory (RNA class) for CASC17 Gene

lncRNA

Aliases for CASC17 Gene

External Ids for CASC17 Gene

Previous GeneCards Identifiers for CASC17 Gene

  • GC17M069094
  • GC17M071097

Summaries for CASC17 Gene

GeneCards Summary for CASC17 Gene

CASC17 (Cancer Susceptibility 17) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CASC17 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CASC17 Gene

Genomics for CASC17 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CASC17 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J071437 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +5.8 5771 3.9 ZSCAN16 ZBTB10 FEZF1 ZEB1 ZIC2 ZNF610 CEBPB ZNF513 ZNF623 FOXA2 HSALNG0118500 HSALNG0118502 CASC17 HSALNG0118488-002 ENSG00000286387 SOX9
GH17J071423 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.3 +21.2 21217 2.8 CEBPB EP300 EBF1 JUND CTCF PKNOX1 GATA2 POLR2A ZNF184 HSALNG0118500 CASC17 piR-38051-129 HSALNG0118497 SOX9
GH17J071431 Enhancer 0.7 Ensembl ENCODE dbSUPER 0.4 +12.7 12663 2.1 JUNB ZBTB20 HSALNG0118500 CASC17 HSALNG0118488-002 piR-38051-129 HSALNG0118497 SOX9
GH17J071411 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.3 +32.5 32494 3.2 CEBPB EP300 JUND POLR2A FOS piR-38051-129 HSALNG0118497 HSALNG0118500 CASC17 SOX9
GH17J071402 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.3 +42.6 42608 1.6 MAFF JUND FOXA1 GLIS1 GATA2 MAFK FOSL2 ZNF366 EP300 FOS piR-38051-129 HSALNG0118497 HSALNG0118500 CASC17 SOX9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CASC17 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CASC17 Gene

Latest Assembly
chr17:70,885,049-71,445,676
(GRCh38/hg38)
Size:
560,628 bases
Orientation:
Minus strand

Previous Assembly
chr17:69,093,915-69,198,320
(GRCh37/hg19 by Entrez Gene)
Size:
104,406 bases
Orientation:
Minus strand

chr17:69,093,916-69,198,318
(GRCh37/hg19 by Ensembl)
Size:
104,403 bases
Orientation:
Minus strand

Genomic View for CASC17 Gene

Genes around CASC17 on UCSC Golden Path with GeneCards custom track
CASC17 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
CASC17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CASC17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CASC17 Gene

Proteins for CASC17 Gene

Post-translational modifications for CASC17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CASC17 Gene

Domains & Families for CASC17 Gene

Gene Families for CASC17 Gene

genes like me logo Genes that share domains with CASC17: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CASC17 Gene

Function for CASC17 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CASC17 Gene

Localization for CASC17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CASC17 Gene

Pathways & Interactions for CASC17 Gene

PathCards logo

SuperPathways for CASC17 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CASC17 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CASC17 Gene

Drugs & Compounds for CASC17 Gene

No Compound Related Data Available

Transcripts for CASC17 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CASC17 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002BF620_9606 lncRNA 2059 3

Ensembl: ENST00000569074 (view in UCSC) ,

LncBook: HSALNT0244656,

LNCipedia: CASC17:3,

URS0000EF0608_9606 lncRNA 2096 1

Ensembl: ENST00000659670 (view in UCSC) ,

URS000075E2D4_9606 lncRNA 2062 1

RefSeq: NR_104152,

URS0000EF5D1D_9606 lncRNA 2022 1

Ensembl: ENST00000665992 (view in UCSC) ,

URS0000EEFA7A_9606 lncRNA 1418 1

Ensembl: ENST00000662323 (view in UCSC) ,

CASC17 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CASC17 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for CASC17 Gene

No ASD Table

Relevant External Links for CASC17 Gene

GeneLoc Exon Structure for
CASC17

Expression for CASC17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CASC17 Gene

mRNA differential expression in normal tissues according to GTEx for CASC17 Gene

This gene is overexpressed in Testis (x52.5).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CASC17

genes like me logo Genes that share expression patterns with CASC17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CASC17 Gene

Orthologs for CASC17 Gene

Evolution for CASC17 Gene

ENSEMBL:
Gene Tree for CASC17 (if available)
TreeFam:
Gene Tree for CASC17 (if available)

No data available for Orthologs for CASC17 Gene

Paralogs for CASC17 Gene

No data available for Paralogs for CASC17 Gene

Variants for CASC17 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for CASC17 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for CASC17 Gene

Variant ID Type Subtype PubMed ID
dgv3279n100 CNV gain 25217958
esv24284 CNV gain 19812545
esv2668788 CNV deletion 23128226
esv2716169 CNV deletion 23290073
esv3641169 CNV loss 21293372
esv3641170 CNV loss 21293372
nsv1062586 CNV loss 25217958
nsv1118599 CNV duplication 24896259
nsv516815 CNV loss 19592680
nsv526073 CNV loss 19592680
nsv575949 CNV loss 21841781

Additional Variant Information for CASC17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CASC17

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CASC17 Gene

Disorders for CASC17 Gene

Additional Disease Information for CASC17

No disorders were found for CASC17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CASC17 Gene

Publications for CASC17 Gene

  1. Genetic variation in prostate-specific antigen-detected prostate cancer and the effect of control selection on genetic association studies. (PMID: 24753544) Knipe DW … Martin RM (Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2014) 3
  2. Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function. (PMID: 23284291) Hancock DB … London SJ (PLoS genetics 2012) 3
  3. Genome-wide association study identifies new prostate cancer susceptibility loci. (PMID: 21743057) Schumacher FR … Kraft P (Human molecular genetics 2011) 3
  4. Identification of seven new prostate cancer susceptibility loci through a genome-wide association study. (PMID: 19767753) Eeles RA … Easton DF (Nature genetics 2009) 3
  5. Multiple newly identified loci associated with prostate cancer susceptibility. (PMID: 18264097) Eeles RA … Easton DF (Nature genetics 2008) 3

Products for CASC17 Gene

Sources for CASC17 Gene