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Aliases for CASC17 Gene
Data sources for CASC17 Gene:
Subcategory (RNA class) for CASC17 Gene
lncRNA
Aliases for CASC17 Gene
- Cancer Susceptibility 17 (HGNC, NCBI Entrez Gene, Ensembl)
- Cancer Susceptibility Candidate 17 (Non-Protein Coding) (HGNC, NCBI Entrez Gene)
- Cancer Susceptibility 17 (Non-Protein Coding) (HGNC, NCBI Entrez Gene)
- Long Intergenic Non-Protein Coding RNA 600 (HGNC, NCBI Entrez Gene)
- LINC00600 (HGNC, NCBI Entrez Gene)
- CASC17 (Ensembl, LNCipedia)
- NONHSAG022649.2 (NONCODE)
- HSALNG0118488 (LncBook)
External Ids for CASC17 Gene
- HGNC: 43911
- NCBI Entrez Gene: 101928165
- Ensembl: ENSG00000260785
Previous GeneCards Identifiers for CASC17 Gene
- GC17M069094
- GC17M071097
Summaries for CASC17 Gene
GeneCards Summary for CASC17 Gene
CASC17 (Cancer Susceptibility 17) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for CASC17 Gene
- HGNC (43911)
- NCBI Entrez Gene (101928165)
- Ensembl (ENSG00000260785)
- Open Targets Platform(ENSG00000260785)
- Monarch Initiative
- Search for CASC17 at DataMed
- Search for CASC17 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CASC17 Gene
Genomics for CASC17 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for CASC17 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around CASC17 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for CASC17 Gene
Latest Assembly
- chr17:70,885,049-71,445,676
- (GRCh38/hg38)
- Size:
- 560,628 bases
- Orientation:
- Minus strand
Previous Assembly
- chr17:69,093,915-69,198,320
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 104,406 bases
- Orientation:
- Minus strand
- chr17:69,093,916-69,198,318
- (GRCh37/hg19 by Ensembl)
- Size:
- 104,403 bases
- Orientation:
- Minus strand
Genomic View for CASC17 Gene
Genes around CASC17 on UCSC Golden Path with GeneCards custom track
CASC17 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 17q24.3 by HGNC
- 17q24.3 by Entrez Gene
- 17q24.3 by Ensembl
CASC17 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for CASC17 Gene
Proteins for CASC17 Gene
Post-translational modifications for CASC17 Gene
No Post-translational modifications
No data available for DME Specific Peptides for CASC17 Gene
Domains & Families for CASC17 Gene
Gene Families for CASC17 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CASC17 Gene
Function for CASC17 Gene
Phenotypes From GWAS Catalog for CASC17 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CASC17 Gene
Localization for CASC17 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CASC17 Gene
Transcripts for CASC17 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for CASC17 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00002BF620_9606 | lncRNA | 2059 | 3 |
Ensembl: ENST00000569074 (view in UCSC) , LncBook: HSALNT0244656, LNCipedia: CASC17:3, |
| URS0000EF0608_9606 | lncRNA | 2096 | 1 |
Ensembl: ENST00000659670 (view in UCSC) , |
| URS000075E2D4_9606 | lncRNA | 2062 | 1 |
RefSeq: NR_104152, |
| URS0000EF5D1D_9606 | lncRNA | 2022 | 1 |
Ensembl: ENST00000665992 (view in UCSC) , |
| URS0000EEFA7A_9606 | lncRNA | 1418 | 1 |
Ensembl: ENST00000662323 (view in UCSC) , |
CASC17 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for CASC17 Gene
- 2 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for CASC17 Gene
- GeneLoc Exon Structure for
- CASC17
Expression for CASC17 Gene
mRNA differential expression in normal tissues according to GTEx for CASC17 Gene
This gene is overexpressed in Testis (x52.5).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CASC17
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CASC17 Gene
Orthologs for CASC17 Gene
No data available for Orthologs for CASC17 Gene
Paralogs for CASC17 Gene
No data available for Paralogs for CASC17 Gene
Variants for CASC17 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv3279n100 | CNV | gain | 25217958 |
| esv24284 | CNV | gain | 19812545 |
| esv2668788 | CNV | deletion | 23128226 |
| esv2716169 | CNV | deletion | 23290073 |
| esv3641169 | CNV | loss | 21293372 |
| esv3641170 | CNV | loss | 21293372 |
| nsv1062586 | CNV | loss | 25217958 |
| nsv1118599 | CNV | duplication | 24896259 |
| nsv516815 | CNV | loss | 19592680 |
| nsv526073 | CNV | loss | 19592680 |
| nsv575949 | CNV | loss | 21841781 |
Additional Variant Information for CASC17 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- CASC17
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CASC17 Gene
Disorders for CASC17 Gene
Additional Disease Information for CASC17
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No disorders were found for CASC17 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CASC17 Gene
Publications for CASC17 Gene
- Genetic variation in prostate-specific antigen-detected prostate cancer and the effect of control selection on genetic association studies. (PMID: 24753544) Knipe DW … Martin RM (Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2014) 3
- Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function. (PMID: 23284291) Hancock DB … London SJ (PLoS genetics 2012) 3
- Genome-wide association study identifies new prostate cancer susceptibility loci. (PMID: 21743057) Schumacher FR … Kraft P (Human molecular genetics 2011) 3
- Identification of seven new prostate cancer susceptibility loci through a genome-wide association study. (PMID: 19767753) Eeles RA … Easton DF (Nature genetics 2009) 3
- Multiple newly identified loci associated with prostate cancer susceptibility. (PMID: 18264097) Eeles RA … Easton DF (Nature genetics 2008) 3
ExternalLinks
Products for CASC17 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CASC17
- Origene Custom Protein Services for CASC17
- Browse OriGene Inhibitory RNA Products For CASC17
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for CASC17
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For CASC17
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for CASC17
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for CASC17
- Search GeneCopoeia for miRNA 3'UTR Target clone products for CASC17
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for CASC17
Sources for CASC17 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB