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Aliases for CASC16 Gene

Subcategory (RNA class) for CASC16 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CASC16 Gene

  • Cancer Susceptibility 16 (Non-Protein Coding) 2 3 5
  • Cancer Susceptibility Candidate 16 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 918 2 3
  • LINC00918 3

External Ids for CASC16 Gene

Previous HGNC Symbols for CASC16 Gene

  • LINC00918

Summaries for CASC16 Gene

GeneCards Summary for CASC16 Gene

CASC16 (Cancer Susceptibility 16 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CASC16 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CASC16 Gene

Genomics for CASC16 Gene

GeneHancer (GH) Regulatory Elements for CASC16 Gene

Promoters and enhancers for CASC16 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I052597 Enhancer 0.9 ENCODE 6.1 +54.3 54311 0.2 FOXA2 MLX ZFP64 ARID4B DMAP1 ZNF143 SP5 NFYC MXD4 MIER2 CASC16 GC16M052598 LOC105371265
GH16I052591 Enhancer 0.2 ENCODE 6.1 +60.2 60192 1.3 CASC16 LOC105371265 GC16M052598
GH16I052577 Enhancer 1.5 UCNEbase ENCODE dbSUPER 0.2 +73.5 73505 1.8 FOXA2 MLX ARID4B ZNF48 ETS1 YY1 RXRA ZHX2 REST PPARG LOC105371265 TOX3 CASC16
GH16I052611 Enhancer 0.9 ENCODE 0.3 +39.5 39540 2.2 FOXA2 MLX ARID4B DMAP1 ETS1 YY1 ZNF548 RXRA SP5 NFYC CHD9 RBL2 ENSG00000260393 LOC105371264 ENSG00000261261 CASC16
GH16I052572 Enhancer 1.1 ENCODE dbSUPER 0.2 +78.4 78429 2.9 PKNOX1 FOXA2 MLX ARID4B DMAP1 YY1 SLC30A9 RXRA SP5 NFYC CHD9 HNRNPA1P48 TOX3 LOC105371265 CASC16
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CASC16 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CASC16 Gene

Genomic Locations for CASC16 Gene
chr16:52,552,087-52,652,105
(GRCh38/hg38)
Size:
100,019 bases
Orientation:
Minus strand
chr16:52,585,999-52,686,017
(GRCh37/hg19)

Genomic View for CASC16 Gene

Genes around CASC16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CASC16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CASC16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CASC16 Gene

Proteins for CASC16 Gene

Post-translational modifications for CASC16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CASC16 Gene

Domains & Families for CASC16 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CASC16 Gene

Function for CASC16 Gene

Phenotypes From GWAS Catalog for CASC16 Gene

Phenotypes for CASC16 Gene

GenomeRNAi human phenotypes for CASC16:
genes like me logo Genes that share phenotypes with CASC16: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CASC16 Gene

Localization for CASC16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CASC16 Gene

Pathways & Interactions for CASC16 Gene

SuperPathways for CASC16 Gene

No Data Available

Interacting Proteins for CASC16 Gene

Gene Ontology (GO) - Biological Process for CASC16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CASC16 Gene

Drugs & Compounds for CASC16 Gene

No Compound Related Data Available

Transcripts for CASC16 Gene

mRNA/cDNA for CASC16 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CASC16 Gene

No ASD Table

Relevant External Links for CASC16 Gene

GeneLoc Exon Structure for
CASC16
ECgene alternative splicing isoforms for
CASC16

Expression for CASC16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CASC16 Gene

mRNA differential expression in normal tissues according to GTEx for CASC16 Gene

This gene is overexpressed in Testis (x48.8).

NURSA nuclear receptor signaling pathways regulating expression of CASC16 Gene:

CASC16
genes like me logo Genes that share expression patterns with CASC16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CASC16 Gene

Orthologs for CASC16 Gene

Evolution for CASC16 Gene

ENSEMBL:
Gene Tree for CASC16 (if available)
TreeFam:
Gene Tree for CASC16 (if available)

No data available for Orthologs for CASC16 Gene

Paralogs for CASC16 Gene

No data available for Paralogs for CASC16 Gene

Variants for CASC16 Gene

Sequence variations from dbSNP and Humsavar for CASC16 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000091441 -- 52,567,193(-) G/C intron_variant
rs1000104980 -- 52,573,231(-) G/A intron_variant
rs1000164599 -- 52,557,216(-) T/C intron_variant
rs1000164944 -- 52,600,152(-) C/A intron_variant
rs1000308414 -- 52,607,471(-) A/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CASC16 Gene

Variant ID Type Subtype PubMed ID
esv2662247 CNV deletion 23128226
esv3638632 CNV gain 21293372
esv3638633 OTHER inversion 21293372
esv3638634 CNV loss 21293372
nsv1065333 CNV gain 25217958
nsv1066719 CNV loss 25217958
nsv476955 CNV novel sequence insertion 20440878
nsv833230 CNV loss 17160897

Additional Variant Information for CASC16 Gene

Human Gene Mutation Database (HGMD)
CASC16
SNPedia medical, phenotypic, and genealogical associations of SNPs for
CASC16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CASC16 Gene

Disorders for CASC16 Gene

Additional Disease Information for CASC16

No disorders were found for CASC16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CASC16 Gene

Publications for CASC16 Gene

  1. Genome-wide association study of breast cancer in Latinas identifies novel protective variants on 6q25. (PMID: 25327703) Fejerman L … Ziv E (Nature communications 2014) 3 58
  2. Genome-wide association study of breast cancer in the Japanese population. (PMID: 24143190) Low SK … Katagiri T (PloS one 2013) 3 58
  3. Genome-wide association studies identify four ER negative-specific breast cancer risk loci. (PMID: 23535733) Garcia-Closas M … Kraft P (Nature genetics 2013) 3 58
  4. Large-scale genotyping identifies 41 new loci associated with breast cancer risk. (PMID: 23535729) Michailidou K … Easton DF (Nature genetics 2013) 3 58
  5. Genome-wide association study identifies a common variant in RAD51B associated with male breast cancer risk. (PMID: 23001122) Orr N … Swerdlow AJ (Nature genetics 2012) 3 58

Products for CASC16 Gene

Sources for CASC16 Gene

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