Aliases for CARS1-AS1 Gene

Subcategory (RNA class) for CARS1-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for CARS1-AS1 Gene

  • CARS1 Antisense RNA 1 2 3
  • CARS-AS1 2 3 5
  • CARS Antisense RNA 1 (Non-Protein Coding) 2 3
  • CARS Antisense RNA 1 2 5
  • NONHSAG007444 92
  • HSALNG0082262 167

External Ids for CARS1-AS1 Gene

Additional External Ids for CARS1-AS1 Gene

Previous HGNC Symbols for CARS1-AS1 Gene

  • CARS-AS1

Summaries for CARS1-AS1 Gene

GeneCards Summary for CARS1-AS1 Gene

CARS1-AS1 (CARS1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CARS1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CARS1-AS1 Gene

Genomics for CARS1-AS1 Gene

GeneHancer (GH) Regulatory Elements for CARS1-AS1 Gene

Promoters and enhancers for CARS1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J003030 Enhancer 0.5 dbSUPER 500.7 +1.1 1117 2 POLR2G NR2F2 RXRA POLR2A SPI1 HLF CARS1-AS1 lnc-NAP1L4-3 NAP1L4 ENSG00000183562 RNU1-91P CARS1
GH11J003000 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 12.6 -28.0 -28008 2.4 ZNF217 ZIC2 ZNF423 ZNF341 POLR2A NFIC ZNF263 NR3C1 ESR1 POLR2G NAP1L4 CARS1-AS1 CARS1 SNORA54 RNU1-91P ENSG00000224513 PHLDA2 SLC22A18 MRGPRG MRGPRG-AS1
GH11J002997 Enhancer 0.8 Ensembl ENCODE dbSUPER 12.5 -30.6 -30623 0.8 NR3C1 POLR2A RFX1 SP7 ZNF121 CARS1-AS1 CARS1 NAP1L4 SNORA54 RNU1-91P ENSG00000224513 PHLDA2 SLC22A18 MRGPRG-AS1 MRGPRG
GH11J002219 Enhancer 0.4 Ensembl 11.1 -809.0 -809009 1.2 USF1 ZNF707 ZNF316 HMBOX1 CARS1-AS1 lnc-TH-1 piR-38351-062
GH11J003035 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +7.9 7913 2.6 CTCF REST MEF2C RAD21 TRIM22 SMC3 ZNF316 ZKSCAN1 MEF2B SPI1 NAP1L4 SNORA54 CARS1-AS1 lnc-NAP1L4-3 RNU1-91P CARS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CARS1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CARS1-AS1 Gene

Genomic Locations for CARS1-AS1 Gene
chr11:3,029,009-3,041,261
(GRCh38/hg38)
Size:
12,253 bases
Orientation:
Plus strand
chr11:3,050,624-3,062,490
(GRCh37/hg19)
Size:
11,867 bases
Orientation:
Plus strand

Genomic View for CARS1-AS1 Gene

Genes around CARS1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CARS1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CARS1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CARS1-AS1 Gene

Proteins for CARS1-AS1 Gene

Post-translational modifications for CARS1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CARS1-AS1 Gene

Domains & Families for CARS1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CARS1-AS1 Gene

Function for CARS1-AS1 Gene

Phenotypes From GWAS Catalog for CARS1-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CARS1-AS1 Gene

Localization for CARS1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CARS1-AS1 Gene

Pathways & Interactions for CARS1-AS1 Gene

PathCards logo

SuperPathways for CARS1-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for CARS1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CARS1-AS1 Gene

Drugs & Compounds for CARS1-AS1 Gene

No Compound Related Data Available

Transcripts for CARS1-AS1 Gene

mRNA/cDNA for CARS1-AS1 Gene

4 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
2 LncBook transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CARS1-AS1 Gene

No ASD Table

Relevant External Links for CARS1-AS1 Gene

GeneLoc Exon Structure for
CARS1-AS1

Expression for CARS1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CARS1-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CARS1-AS1 Gene

Orthologs for CARS1-AS1 Gene

Evolution for CARS1-AS1 Gene

ENSEMBL:
Gene Tree for CARS1-AS1 (if available)
TreeFam:
Gene Tree for CARS1-AS1 (if available)

No data available for Orthologs for CARS1-AS1 Gene

Paralogs for CARS1-AS1 Gene

No data available for Paralogs for CARS1-AS1 Gene

Variants for CARS1-AS1 Gene

Additional dbSNP identifiers (rs#s) for CARS1-AS1 Gene

Additional Variant Information for CARS1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CARS1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CARS1-AS1 Gene

Disorders for CARS1-AS1 Gene

Additional Disease Information for CARS1-AS1

No disorders were found for CARS1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CARS1-AS1 Gene

Publications for CARS1-AS1 Gene

  1. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

No data available for Mastermind for CARS1-AS1 Gene

Products for CARS1-AS1 Gene

Sources for CARS1-AS1 Gene