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Aliases for CARS-AS1 Gene

Subcategory (RNA class) for CARS-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CARS-AS1 Gene

  • CARS Antisense RNA 1 2 3 5
  • CARS Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for CARS-AS1 Gene

Summaries for CARS-AS1 Gene

GeneCards Summary for CARS-AS1 Gene

CARS-AS1 (CARS Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CARS-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CARS-AS1 Gene

Genomics for CARS-AS1 Gene

GeneHancer (GH) Regulatory Elements for CARS-AS1 Gene

Promoters and enhancers for CARS-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J003030 Enhancer 0.6 Ensembl dbSUPER 650.7 +1.7 1692 0.2 RXRA NR2F2 CARS-AS1 GC11M003048 RNU1-91P CARS
GH11J003795 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 12.1 +768.2 768202 3.9 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 YY1 POLR2B E2F8 ZNF207 NUP98 PGAP2 CARS-AS1 TRIM68 GC11P003794 GC11M003656 GC11M003657
GH11J003000 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 12.5 -28.0 -27981 2.1 ZBTB6 NFIB ZIC2 GATA3 POLR2A ZBTB48 RCOR1 ZNF600 CHD2 ZBTB20 NAP1L4 CARS-AS1 CARS SNORA54 RNU1-91P ENSG00000224513 PHLDA2 SLC22A18 MRGPRG MRGPRG-AS1
GH11J002480 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 11.1 -548.0 -547987 1.6 ZNF707 PKNOX1 POLR2A CREB1 MNT FOS TRPM5 CARS-AS1 TSSC2 KCNQ1 GC11M002505 GC11P002446
GH11J002997 Enhancer 0.6 ENCODE dbSUPER 12.5 -30.7 -30716 0.6 ZNF121 RFX1 SP7 CARS-AS1 CARS NAP1L4 SNORA54 RNU1-91P ENSG00000224513 PHLDA2 SLC22A18 MRGPRG MRGPRG-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CARS-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CARS-AS1 Gene

Genomic Locations for CARS-AS1 Gene
chr11:3,029,009-3,041,260
(GRCh38/hg38)
Size:
12,252 bases
Orientation:
Plus strand
chr11:3,050,624-3,062,490
(GRCh37/hg19)
Size:
11,867 bases
Orientation:
Plus strand

Genomic View for CARS-AS1 Gene

Genes around CARS-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CARS-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CARS-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CARS-AS1 Gene

Function for CARS-AS1 Gene

Phenotypes From GWAS Catalog for CARS-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CARS-AS1 Gene

Localization for CARS-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CARS-AS1 Gene

Pathways & Interactions for CARS-AS1 Gene

SuperPathways for CARS-AS1 Gene

No Data Available

Interacting Proteins for CARS-AS1 Gene

Gene Ontology (GO) - Biological Process for CARS-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CARS-AS1 Gene

Drugs & Compounds for CARS-AS1 Gene

No Compound Related Data Available

Transcripts for CARS-AS1 Gene

mRNA/cDNA for CARS-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CARS-AS1 Gene

No ASD Table

Relevant External Links for CARS-AS1 Gene

GeneLoc Exon Structure for
CARS-AS1
ECgene alternative splicing isoforms for
CARS-AS1

Expression for CARS-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CARS-AS1 Gene

genes like me logo Genes that share expression patterns with CARS-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CARS-AS1 Gene

Orthologs for CARS-AS1 Gene

Evolution for CARS-AS1 Gene

ENSEMBL:
Gene Tree for CARS-AS1 (if available)
TreeFam:
Gene Tree for CARS-AS1 (if available)

No data available for Orthologs for CARS-AS1 Gene

Paralogs for CARS-AS1 Gene

No data available for Paralogs for CARS-AS1 Gene

Variants for CARS-AS1 Gene

Additional Variant Information for CARS-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CARS-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CARS-AS1 Gene

Disorders for CARS-AS1 Gene

Additional Disease Information for CARS-AS1

No disorders were found for CARS-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CARS-AS1 Gene

Publications for CARS-AS1 Gene

  1. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for CARS-AS1 Gene

Sources for CARS-AS1 Gene

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