Aliases for CARNMT1-AS1 Gene

Subcategory (RNA class) for CARNMT1-AS1 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for CARNMT1-AS1 Gene

  • CARNMT1 Antisense RNA 1 2 3 5
  • C9orf41 Antisense RNA 1 2 3
  • C9orf41-AS1 3 168
  • NONHSAG052590 92
  • CARNMT1-AS1 2

External Ids for CARNMT1-AS1 Gene

Previous HGNC Symbols for CARNMT1-AS1 Gene

  • C9orf41-AS1

Summaries for CARNMT1-AS1 Gene

GeneCards Summary for CARNMT1-AS1 Gene

CARNMT1-AS1 (CARNMT1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CARNMT1-AS1 include Astrocytoma.

Additional gene information for CARNMT1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CARNMT1-AS1 Gene

Genomics for CARNMT1-AS1 Gene

GeneHancer (GH) Regulatory Elements for CARNMT1-AS1 Gene

Promoters and enhancers for CARNMT1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J074951 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 511.1 -0.1 -140 3.5 HNRNPK ZBTB40 CTCF SIN3A NRF1 POLR2G GTF2E2 PHF8 ZFX ZIC2 CARNMT1-AS1 C9orf40 NMRK1 OSTF1 CARNMT1 TRPM6 RNU6-445P L13712-029
GH09J075644 Enhancer 0.4 Ensembl 9.9 +692.0 692013 0.6 ZNF300 NFIC NFIB LCORL ZNF544 CARNMT1-AS1 piR-49315 ENSG00000236376 RF00017-7630
GH09J074235 Enhancer 0.3 dbSUPER 5.1 -716.2 -716205 1.5 MAFF MAFK CARNMT1-AS1 lnc-TRPM6-6 LOC101927329 lnc-TRPM6-3
GH09J074220 Enhancer 0.2 Ensembl 5.2 -732.3 -732287 0.8 CARNMT1-AS1 lnc-TRPM6-6 LOC101927329 lnc-TRPM6-3
GH09J074263 Enhancer 0.2 dbSUPER 5.1 -688.6 -688608 1.3 RORB CARNMT1-AS1 LOC101927329 lnc-TRPM6-3 lnc-TRPM6-6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CARNMT1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CARNMT1-AS1 Gene

Genomic Locations for CARNMT1-AS1 Gene
chr9:74,952,888-74,997,382
(GRCh38/hg38)
Size:
44,495 bases
Orientation:
Plus strand
chr9:77,567,884-77,611,209
(GRCh37/hg19)
Size:
43,326 bases
Orientation:
Plus strand

Genomic View for CARNMT1-AS1 Gene

Genes around CARNMT1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CARNMT1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CARNMT1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CARNMT1-AS1 Gene

Proteins for CARNMT1-AS1 Gene

Post-translational modifications for CARNMT1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CARNMT1-AS1 Gene

Domains & Families for CARNMT1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CARNMT1-AS1 Gene

Function for CARNMT1-AS1 Gene

Phenotypes From GWAS Catalog for CARNMT1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CARNMT1-AS1 Gene

Localization for CARNMT1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CARNMT1-AS1 Gene

Pathways & Interactions for CARNMT1-AS1 Gene

PathCards logo

SuperPathways for CARNMT1-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for CARNMT1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CARNMT1-AS1 Gene

Drugs & Compounds for CARNMT1-AS1 Gene

No Compound Related Data Available

Transcripts for CARNMT1-AS1 Gene

mRNA/cDNA for CARNMT1-AS1 Gene

4 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CARNMT1-AS1 Gene

No ASD Table

Relevant External Links for CARNMT1-AS1 Gene

GeneLoc Exon Structure for
CARNMT1-AS1

Expression for CARNMT1-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CARNMT1-AS1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CARNMT1-AS1 Gene

Orthologs for CARNMT1-AS1 Gene

Evolution for CARNMT1-AS1 Gene

ENSEMBL:
Gene Tree for CARNMT1-AS1 (if available)
TreeFam:
Gene Tree for CARNMT1-AS1 (if available)

No data available for Orthologs for CARNMT1-AS1 Gene

Paralogs for CARNMT1-AS1 Gene

No data available for Paralogs for CARNMT1-AS1 Gene

Variants for CARNMT1-AS1 Gene

Additional dbSNP identifiers (rs#s) for CARNMT1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for CARNMT1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv988386 CNV insertion 20482838
nsv507518 OTHER sequence alteration 20534489
nsv509303 CNV insertion 20534489
nsv982307 CNV duplication 23825009

Additional Variant Information for CARNMT1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CARNMT1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CARNMT1-AS1 Gene

Disorders for CARNMT1-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CARNMT1-AS1 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
astrocytoma
  • astrocytic tumor
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with CARNMT1-AS1: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for CARNMT1-AS1 Gene

Publications for CARNMT1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for CARNMT1-AS1 Gene

Products for CARNMT1-AS1 Gene

Sources for CARNMT1-AS1 Gene