Aliases for CARD8-AS1 Gene

Subcategory (RNA class) for CARD8-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for CARD8-AS1 Gene

  • CARD8 Antisense RNA 1 2 3 5
  • CARD8-AS1 2 170
  • HSALNG0126842 169
  • NONHSAG026159 94

External Ids for CARD8-AS1 Gene

Summaries for CARD8-AS1 Gene

GeneCards Summary for CARD8-AS1 Gene

CARD8-AS1 (CARD8 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CARD8-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CARD8-AS1 Gene

Genomics for CARD8-AS1 Gene

GeneHancer (GH) Regulatory Elements for CARD8-AS1 Gene

Promoters and enhancers for CARD8-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CARD8-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CARD8-AS1 Gene

Genomic Locations for CARD8-AS1 Gene
chr19:48,255,674-48,258,253
(GRCh38/hg38)
Size:
2,580 bases
Orientation:
Plus strand
chr19:48,758,932-48,761,456
(GRCh37/hg19)
Size:
2,525 bases
Orientation:
Plus strand

Genomic View for CARD8-AS1 Gene

Genes around CARD8-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CARD8-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CARD8-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CARD8-AS1 Gene

Proteins for CARD8-AS1 Gene

Post-translational modifications for CARD8-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CARD8-AS1 Gene

Domains & Families for CARD8-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CARD8-AS1 Gene

Function for CARD8-AS1 Gene

Phenotypes From GWAS Catalog for CARD8-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CARD8-AS1 Gene

Localization for CARD8-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CARD8-AS1 Gene

Pathways & Interactions for CARD8-AS1 Gene

PathCards logo

SuperPathways for CARD8-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CARD8-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CARD8-AS1 Gene

Drugs & Compounds for CARD8-AS1 Gene

No Compound Related Data Available

Transcripts for CARD8-AS1 Gene

mRNA/cDNA for CARD8-AS1 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(10) RNACentral transcripts :
(3) NONCODE transcripts :
(6) LncBook transcripts :
(7) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CARD8-AS1 Gene

No ASD Table

Relevant External Links for CARD8-AS1 Gene

GeneLoc Exon Structure for
CARD8-AS1
ECgene alternative splicing isoforms for
CARD8-AS1

Expression for CARD8-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CARD8-AS1 Gene

genes like me logo Genes that share expression patterns with CARD8-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CARD8-AS1 Gene

Orthologs for CARD8-AS1 Gene

Evolution for CARD8-AS1 Gene

ENSEMBL:
Gene Tree for CARD8-AS1 (if available)
TreeFam:
Gene Tree for CARD8-AS1 (if available)

No data available for Orthologs for CARD8-AS1 Gene

Paralogs for CARD8-AS1 Gene

No data available for Paralogs for CARD8-AS1 Gene

Variants for CARD8-AS1 Gene

Sequence variations from dbSNP and Humsavar for CARD8-AS1 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000576173 -- 48,257,957(+) G/A/C non_coding_transcript_variant
rs1002527839 -- 48,255,287(+) A/G upstream_transcript_variant
rs1002819439 -- 48,258,129(+) G/A non_coding_transcript_variant
rs1003101860 -- 48,257,843(+) T/C non_coding_transcript_variant
rs1003154439 -- 48,256,595(+) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CARD8-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv3613n100 CNV gain 25217958
dgv3614n100 CNV gain 25217958
dgv3615n100 CNV loss 25217958
dgv3616n100 CNV loss 25217958
esv34181 CNV loss 18971310
esv8882 OTHER inversion 19470904
nsv1056459 CNV loss 25217958
nsv1057454 CNV loss 25217958
nsv1065106 CNV gain 25217958
nsv1065311 CNV gain 25217958
nsv458717 CNV loss 19166990
nsv469623 CNV loss 16826518
nsv517364 CNV gain+loss 19592680
nsv579903 CNV loss 21841781
nsv833854 CNV loss 17160897
nsv9739 CNV gain+loss 18304495

Additional Variant Information for CARD8-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CARD8-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CARD8-AS1 Gene

Disorders for CARD8-AS1 Gene

Additional Disease Information for CARD8-AS1

No disorders were found for CARD8-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CARD8-AS1 Gene

Publications for CARD8-AS1 Gene

  1. Polymorphism in lncRNA AC008392.1 and its interaction with smoking on the risk of lung cancer in a Chinese population. (PMID: 29881308) Lv X … Yin Z (Cancer management and research 2018) 2 3 56
  2. Expression Quantitative Trait Loci for CARD8 Contributes to Risk of Two Infection-Related Cancers--Hepatocellular Carcinoma and Cervical Cancer. (PMID: 26147888) Yin J … Li N (PloS one 2015) 2 3 56
  3. Co-expression Network Analysis of Human lncRNAs and Cancer Genes. (PMID: 25392693) Cogill SB … Wang L (Cancer informatics 2014) 2 3 56
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for CARD8-AS1 Gene

Sources for CARD8-AS1 Gene