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Aliases for CAPN10-DT Gene

Subcategory (RNA class) for CAPN10-DT Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for CAPN10-DT Gene

  • CAPN10 Divergent Transcript 2 3
  • CAPN10 Antisense RNA 1 (Head To Head) 2 3 5
  • CAPN10-AS1 3 5
  • Locus 959 2 3
  • Locus959 3

External Ids for CAPN10-DT Gene

ORGUL Members for CAPN10-DT Gene

Previous HGNC Symbols for CAPN10-DT Gene

  • CAPN10-AS1

Summaries for CAPN10-DT Gene

GeneCards Summary for CAPN10-DT Gene

CAPN10-DT (CAPN10 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CAPN10-DT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CAPN10-DT Gene

Genomics for CAPN10-DT Gene

GeneHancer (GH) Regulatory Elements for CAPN10-DT Gene

Promoters and enhancers for CAPN10-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J240583 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 650.7 +1.0 974 4.5 HDGF PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 IRF4 CAPN10 CAPN10-DT PIR33196 GPR35
GH02J241543 Enhancer 1.2 Ensembl ENCODE 18.9 -959.5 -959502 4.4 HDGF PKNOX1 ZNF133 ARID4B YBX1 ZNF2 ZNF48 ETS1 ZNF121 ZNF766 ENSG00000223374 MTERF4 ATG4B ANKMY1 ING5 CAPN10 FARP2 SNED1 D2HGDH DTYMK
GH02J240578 Enhancer 1.4 Ensembl ENCODE dbSUPER 6.6 +7.0 6979 3.1 FOXA2 CLOCK MLX ARID4B SIN3A DMAP1 IRF4 SLC30A9 ZNF143 FOS ANKMY1 MTERF4 ENSG00000223374 FARP2 CAPN10 CAPN10-DT PIR33196 RNPEPL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CAPN10-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for CAPN10-DT Gene

Genomic Locations for CAPN10-DT Gene
chr2:240,582,700-240,586,699
(GRCh38/hg38)
Size:
4,000 bases
Orientation:
Minus strand
chr2:241,522,117-241,526,116
(GRCh37/hg19)
Size:
4,000 bases
Orientation:
Minus strand

Genomic View for CAPN10-DT Gene

Genes around CAPN10-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CAPN10-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CAPN10-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CAPN10-DT Gene

Proteins for CAPN10-DT Gene

Post-translational modifications for CAPN10-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for CAPN10-DT Gene

Domains & Families for CAPN10-DT Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CAPN10-DT Gene

Function for CAPN10-DT Gene

Phenotypes From GWAS Catalog for CAPN10-DT Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CAPN10-DT Gene

Localization for CAPN10-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CAPN10-DT Gene

Pathways & Interactions for CAPN10-DT Gene

SuperPathways for CAPN10-DT Gene

No Data Available

Interacting Proteins for CAPN10-DT Gene

Gene Ontology (GO) - Biological Process for CAPN10-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CAPN10-DT Gene

Drugs & Compounds for CAPN10-DT Gene

No Compound Related Data Available

Transcripts for CAPN10-DT Gene

mRNA/cDNA for CAPN10-DT Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CAPN10-DT Gene

No ASD Table

Relevant External Links for CAPN10-DT Gene

GeneLoc Exon Structure for
CAPN10-DT
ECgene alternative splicing isoforms for
CAPN10-DT

Expression for CAPN10-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CAPN10-DT Gene

Orthologs for CAPN10-DT Gene

Evolution for CAPN10-DT Gene

ENSEMBL:
Gene Tree for CAPN10-DT (if available)
TreeFam:
Gene Tree for CAPN10-DT (if available)

No data available for Orthologs for CAPN10-DT Gene

Paralogs for CAPN10-DT Gene

No data available for Paralogs for CAPN10-DT Gene

Variants for CAPN10-DT Gene

Sequence variations from dbSNP and Humsavar for CAPN10-DT Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000263371 -- 240,584,074(-) G/T non_coding_transcript_variant
rs1000288221 -- 240,584,222(-) G/C non_coding_transcript_variant
rs1000432931 -- 240,586,873(-) G/T upstream_transcript_variant
rs1000593264 -- 240,582,456(-) A/T downstream_transcript_variant
rs1001460094 -- 240,586,812(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CAPN10-DT Gene

Variant ID Type Subtype PubMed ID
esv2759119 CNV gain 17122850
nsv1001262 CNV gain 25217958
nsv470529 CNV loss 18288195
nsv834586 CNV loss 17160897
nsv955291 CNV deletion 24416366

Additional Variant Information for CAPN10-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CAPN10-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CAPN10-DT Gene

Disorders for CAPN10-DT Gene

Additional Disease Information for CAPN10-DT

No disorders were found for CAPN10-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CAPN10-DT Gene

Publications for CAPN10-DT Gene

  1. Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells. (PMID: 23382218) Sigova AA … Young RA (Proceedings of the National Academy of Sciences of the United States of America 2013) 2 3 58
  2. Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder. (PMID: 21254220) Jiang Y … Zhang H (Genetic epidemiology 2011) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for CAPN10-DT Gene

Sources for CAPN10-DT Gene

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