Aliases for CAPN10-DT Gene

Data sources for CAPN10-DT Gene:

Subcategory (RNA class) for CAPN10-DT Gene

lncRNA

Aliases for CAPN10-DT Gene

External Ids for CAPN10-DT Gene

Previous HGNC Symbols for CAPN10-DT Gene

  • CAPN10-AS1

Summaries for CAPN10-DT Gene

GeneCards Summary for CAPN10-DT Gene

CAPN10-DT (CAPN10 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CAPN10-DT include Hyperoxaluria, Primary, Type I and Primary Hyperoxaluria.

Additional gene information for CAPN10-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CAPN10-DT Gene

Genomics for CAPN10-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CAPN10-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J240583 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +0.7 651 5.1 CHD2 TBP ZBTB10 SP1 BCL11A MXD4 CEBPA SIX5 NR2C1 MNT CAPN10 CAPN10-DT lnc-ANKMY1-4 piR-40197 ANKMY1 ENSG00000223374 GPR35 OTOS COPS9 KIF1A
GH02J241543 Enhancer 1.1 ENCODE CraniofacialAtlas 18.9 -959.5 -959502 4.4 PLRG1 FOXA1 IRF2 NONO ZIC2 ZNF513 RAD51 VEZF1 SAP130 NBN lnc-BOK-4 ENSG00000223374 ATG4B MTERF4 ANKMY1 ING5 CAPN10 ENSG00000235351 FARP2 D2HGDH
GH02J240578 Enhancer 1.2 ENCODE dbSUPER 6.7 +7.0 6979 3.1 SP1 MXD4 CEBPA MNT ZFP64 CTCF BHLHE40 HOMEZ KDM6A THAP11 HSALNG0023595 ENSG00000223374 ANKMY1 FARP2 CAPN10 SNED1 MTERF4 CAPN10-DT HSALNG0023594 RNPEPL1
GH02J240816 Enhancer 0.5 Ensembl 10 -229.6 -229602 0.2 STAT5A NFATC1 ARNT ZSCAN4 POLR2A MNT ZNF211 CAPN10 ATG4B CAPN10-DT MTERF4 MAB21L4 HSALNG0023618 KIF1A lnc-AQP12A-2 AQP12A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CAPN10-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CAPN10-DT Gene

Latest Assembly
chr2:240,582,621-240,586,699
(GRCh38/hg38)
Size:
4,079 bases
Orientation:
Minus strand

Previous Assembly
chr2:241,522,167-241,525,733
(GRCh37/hg19 by Entrez Gene)
Size:
3,567 bases
Orientation:
Minus strand

chr2:241,522,117-241,526,116
(GRCh37/hg19 by Ensembl)
Size:
4,000 bases
Orientation:
Minus strand

Genomic View for CAPN10-DT Gene

Genes around CAPN10-DT on UCSC Golden Path with GeneCards custom track
CAPN10-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
CAPN10-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CAPN10-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CAPN10-DT Gene

Proteins for CAPN10-DT Gene

Post-translational modifications for CAPN10-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for CAPN10-DT Gene

Domains & Families for CAPN10-DT Gene

Gene Families for CAPN10-DT Gene

genes like me logo Genes that share domains with CAPN10-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CAPN10-DT Gene

Function for CAPN10-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CAPN10-DT Gene

Localization for CAPN10-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CAPN10-DT Gene

Pathways & Interactions for CAPN10-DT Gene

PathCards logo

SuperPathways for CAPN10-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for CAPN10-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CAPN10-DT Gene

Drugs & Compounds for CAPN10-DT Gene

No Compound Related Data Available

Transcripts for CAPN10-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CAPN10-DT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000016DD3F_9606 lncRNA 4001 3

Ensembl: ENST00000567819 (view in UCSC) ,

LNCipedia: CAPN10-DT:6,

NONCODE: NONHSAT077838.2,

URS0000759CED_9606 lncRNA 3568 2

RefSeq: NR_103792,

LNCipedia: CAPN10-DT:9,

URS0000D5DC95_9606 lncRNA 3911 1

LNCipedia: CAPN10-DT:8,

URS0000EB7C86_9606 lncRNA 3568 1

LncBook: HSALNT0288902,

URS0001BCFEBD_9606 lncRNA 3567 1

LncBook: HSALNT0288902,

CAPN10-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CAPN10-DT Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for CAPN10-DT Gene

No ASD Table

Relevant External Links for CAPN10-DT Gene

GeneLoc Exon Structure for
CAPN10-DT

Expression for CAPN10-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CAPN10-DT

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CAPN10-DT Gene

Orthologs for CAPN10-DT Gene

Evolution for CAPN10-DT Gene

ENSEMBL:
Gene Tree for CAPN10-DT (if available)
TreeFam:
Gene Tree for CAPN10-DT (if available)

No data available for Orthologs for CAPN10-DT Gene

Paralogs for CAPN10-DT Gene

No data available for Paralogs for CAPN10-DT Gene

Variants for CAPN10-DT Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for CAPN10-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for CAPN10-DT Gene

Variant ID Type Subtype PubMed ID
esv2759119 CNV gain 17122850
nsv1001262 CNV gain 25217958
nsv470529 CNV loss 18288195
nsv834586 CNV loss 17160897
nsv955291 CNV deletion 24416366

Additional Variant Information for CAPN10-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CAPN10-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CAPN10-DT Gene

Disorders for CAPN10-DT Gene

MalaCards: The human disease database

(2) MalaCards diseases for CAPN10-DT Gene - From: CVR

Disorder Aliases PubMed IDs
hyperoxaluria, primary, type i
  • hp1
primary hyperoxaluria
  • hyperoxaluria, primary
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for CAPN10-DT

genes like me logo Genes that share disorders with CAPN10-DT: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CAPN10-DT Gene

Publications for CAPN10-DT Gene

  1. Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells. (PMID: 23382218) Sigova AA … Young RA (Proceedings of the National Academy of Sciences of the United States of America 2013) 2 3
  2. Propensity score-based nonparametric test revealing genetic variants underlying bipolar disorder. (PMID: 21254220) Jiang Y … Zhang H (Genetic epidemiology 2011) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for CAPN10-DT Gene

Sources for CAPN10-DT Gene