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Aliases for CAND1.11 Gene

Subcategory (RNA class) for CAND1.11 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for CAND1.11 Gene

  • Uncharacterized LOC100130460 3

External Ids for CAND1.11 Gene

Previous GeneCards Identifiers for CAND1.11 Gene

  • GC11U902112

Summaries for CAND1.11 Gene

GeneCards Summary for CAND1.11 Gene

CAND1.11 (Uncharacterized LOC100130460) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for CAND1.11 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CAND1.11 Gene

Genomics for CAND1.11 Gene

GeneHancer (GH) Regulatory Elements for CAND1.11 Gene

Promoters and enhancers for CAND1.11 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J010300 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.7 -2.5 -2453 10.1 DMAP1 IRF4 YY1 ZNF213 ZNF143 SP3 SSRP1 ZNF610 GLIS1 RCOR2 LOC105376544 SBF2 ADM AMPD3 GC11M010302 ZBED5 CTR9 ZNF143 ENSG00000255463 RPL21P97
GH11J010319 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +16.6 16567 11.3 SMAD1 FOXA2 MLX ARID4B SIN3A DMAP1 YY1 FOS SP5 REST PIR60970 LOC105376544 SBF2 ADM ENSG00000254865 MRVI1 LYVE1 ENSG00000250041 CAND1.11 AMPD3
GH11J010348 Enhancer 2.1 VISTA FANTOM5 Ensembl ENCODE dbSUPER 0.3 +43.9 43920 7.6 FOXA2 ARID4B SIN3A ZNF2 YY1 ETS1 SLC30A9 TCF12 FOS ATF7 LYVE1 MRVI1 SBF2 ADM EIF4G2 AMPD3 PIR60970 CAND1.11 GC11M010399 RNU6ATAC33P
GH11J010314 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +6.6 6550 0.5 MEIS2 PKNOX1 ATF1 NFYA SAP130 CEBPB NFYC RFX5 SP1 RFXANK AMPD3 CAND1.11 PIR60970
GH11J010316 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +9.7 9692 2.2 PKNOX1 EBF1 BATF IRF4 ZFHX2 POLR2A SCRT2 EED ATF7 ZNF548 ZBED5 RPL21P97 ENSG00000254397 SBF2 ENSG00000250041 AMPD3 PIR60970 CAND1.11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CAND1.11 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CAND1.11 Gene

Genomic Locations for CAND1.11 Gene
chr11:10,308,313-10,430,673
(GRCh38/hg38)
Size:
122,361 bases
Orientation:
Plus strand

Genomic View for CAND1.11 Gene

Genes around CAND1.11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CAND1.11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CAND1.11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CAND1.11 Gene

Function for CAND1.11 Gene

Phenotypes From GWAS Catalog for CAND1.11 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CAND1.11 Gene

Localization for CAND1.11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CAND1.11 Gene

Pathways & Interactions for CAND1.11 Gene

SuperPathways for CAND1.11 Gene

No Data Available

Interacting Proteins for CAND1.11 Gene

Gene Ontology (GO) - Biological Process for CAND1.11 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CAND1.11 Gene

Drugs & Compounds for CAND1.11 Gene

No Compound Related Data Available

Transcripts for CAND1.11 Gene

mRNA/cDNA for CAND1.11 Gene

(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CAND1.11 Gene

No ASD Table

Relevant External Links for CAND1.11 Gene

GeneLoc Exon Structure for
CAND1.11

Expression for CAND1.11 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CAND1.11 Gene

Orthologs for CAND1.11 Gene

No data available for Orthologs and Evolution for CAND1.11 Gene

Paralogs for CAND1.11 Gene

No data available for Paralogs for CAND1.11 Gene

Variants for CAND1.11 Gene

Sequence variations from dbSNP and Humsavar for CAND1.11 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000008264 -- 10,383,174(+) G/A intron_variant
rs1000010743 -- 10,352,669(+) G/A intron_variant
rs1000031729 -- 10,421,139(+) A/C/G intron_variant
rs1000043294 -- 10,343,672(+) T/C intron_variant
rs1000053872 -- 10,315,434(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CAND1.11 Gene

Variant ID Type Subtype PubMed ID
esv2518130 CNV deletion 19546169
esv2676081 CNV deletion 23128226
esv2744101 CNV deletion 23290073
esv2744102 CNV deletion 23290073
esv29122 CNV loss 19812545
esv3547312 CNV deletion 23714750
esv3625355 CNV loss 21293372
esv3625357 CNV loss 21293372
nsv1037131 CNV loss 25217958
nsv1070008 CNV deletion 25765185
nsv1113361 CNV deletion 24896259
nsv1127161 CNV deletion 24896259
nsv1137987 CNV deletion 24896259
nsv476885 CNV novel sequence insertion 20440878
nsv483076 CNV gain+loss 15286789
nsv553477 CNV loss 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for CAND1.11 Gene

Disorders for CAND1.11 Gene

Additional Disease Information for CAND1.11

No disorders were found for CAND1.11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CAND1.11 Gene

Publications for CAND1.11 Gene

  1. Discovery and refinement of loci associated with lipid levels. (PMID: 24097068) Willer CJ … Global Lipids Genetics Consortium (Nature genetics 2013) 3 58
  2. Genome-wide association study on plasma levels of midregional-proadrenomedullin and C-terminal-pro-endothelin-1. (PMID: 23381795) Verweij N … van der Harst P (Hypertension (Dallas, Tex. : 1979) 2013) 3 58
  3. Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure. (PMID: 21909110) Wain LV … van Duijn CM (Nature genetics 2011) 3 58
  4. Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk. (PMID: 21909115) International Consortium for Blood Pressure Genome-Wide Association Studies … Johnson T (Nature 2011) 3 58
  5. Biological, clinical and population relevance of 95 loci for blood lipids. (PMID: 20686565) Teslovich TM … Kathiresan S (Nature 2010) 3 58

Products for CAND1.11 Gene

Sources for CAND1.11 Gene

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