Aliases for CAMTA1-IT1 Gene

Data sources for CAMTA1-IT1 Gene:

RNA type for CAMTA1-IT1 Gene

lncRNA

Aliases for CAMTA1-IT1 Gene

External Ids for CAMTA1-IT1 Gene

Previous GeneCards Identifiers for CAMTA1-IT1 Gene

  • GC00U933967
  • GC01P007430

Summaries for CAMTA1-IT1 Gene

GeneCards Summary for CAMTA1-IT1 Gene

CAMTA1-IT1 (CAMTA1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CAMTA1-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CAMTA1-IT1 Gene

Genomics for CAMTA1-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CAMTA1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J007333 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 0.4 -23.3 -23345 3.2 ZNF600 ATF2 BRCA1 YY1 CEBPB ZNF341 MAX EP300 CUX1 TCF7L2 HSALNG0000558 CAMTA1-AS2 CAMTA1-IT1 VAMP3 CAMTA1
GH01J007378 Enhancer 0.8 ENCODE CraniofacialAtlas 0.4 +21.3 21330 2.3 EZH2 ATF2 POLR2A CEBPB MAX EP300 PRDM1 RFX5 SMC3 STAT3 HSALNG0000560 piR-48209-014 CAMTA1-AS2 CAMTA1-IT1 VAMP3 CAMTA1
GH01J007347 Enhancer 0.6 Ensembl 0.4 -11.6 -11645 0.2 ZIC2 RXRA HNF4A RAD21 GLIS1 REST SP1 MAX HNF4G NR2F2 HSALNG0000558 CAMTA1-IT1 VAMP3 CAMTA1
GH01J007346 Enhancer 0.5 Ensembl 0.4 -12.2 -12245 0.2 ZNF768 ZFP36 ZMYM3 RAD21 BCOR KDM1A CAMTA1-AS2 HSALNG0000558 CAMTA1-IT1 VAMP3 CAMTA1
GH01J007373 Enhancer 0.5 Ensembl CraniofacialAtlas 0.4 +16.1 16055 2 RFX1 BMI1 CAMTA1-AS2 CAMTA1-AS1 HSALNG0000560 CAMTA1-IT1 VAMP3 CAMTA1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CAMTA1-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CAMTA1-IT1 Gene

Latest Assembly
chr1:7,358,546-7,370,283
(GRCh38/hg38)
Size:
11,738 bases
Orientation:
Plus strand

Previous Assembly
chr1:7,429,003-7,430,331
(GRCh37/hg19 by Ensembl)
Size:
1,329 bases
Orientation:
Plus strand

Genomic View for CAMTA1-IT1 Gene

Genes around CAMTA1-IT1 on UCSC Golden Path with GeneCards custom track
CAMTA1-IT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
CAMTA1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CAMTA1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for CAMTA1-IT1 Gene

Proteins for CAMTA1-IT1 Gene

Post-translational modifications for CAMTA1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CAMTA1-IT1 Gene

Domains & Families for CAMTA1-IT1 Gene

Gene Families for CAMTA1-IT1 Gene

genes like me logo Genes that share domains with CAMTA1-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CAMTA1-IT1 Gene

Function for CAMTA1-IT1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CAMTA1-IT1 Gene

Localization for CAMTA1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CAMTA1-IT1 Gene

Pathways & Interactions for CAMTA1-IT1 Gene

PathCards logo

SuperPathways for CAMTA1-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CAMTA1-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CAMTA1-IT1 Gene

Drugs & Compounds for CAMTA1-IT1 Gene

No Compound Related Data Available

Transcripts for CAMTA1-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CAMTA1-IT1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000003800B_9606 lncRNA 367 4

Ensembl: ENST00000427317 (view in UCSC) ,

LncBook: HSALNT0001167,

LNCipedia: CAMTA1-IT1:1,

NONCODE: NONHSAT000699.2,

URS0000E9AEA8_9606 lncRNA 307 1

LncBook: HSALNT0001165,

CAMTA1-IT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CAMTA1-IT1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for CAMTA1-IT1 Gene

No ASD Table

Relevant External Links for CAMTA1-IT1 Gene

GeneLoc Exon Structure for
CAMTA1-IT1

Expression for CAMTA1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CAMTA1-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for CAMTA1-IT1 Gene

This gene is overexpressed in Testis (x14.6).
genes like me logo Genes that share expression patterns with CAMTA1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CAMTA1-IT1 Gene

Orthologs for CAMTA1-IT1 Gene

Evolution for CAMTA1-IT1 Gene

ENSEMBL:
Gene Tree for CAMTA1-IT1 (if available)
TreeFam:
Gene Tree for CAMTA1-IT1 (if available)
Alliance of Genome Resources:
Additional Orthologs for CAMTA1-IT1

No data available for Orthologs for CAMTA1-IT1 Gene

Paralogs for CAMTA1-IT1 Gene

No data available for Paralogs for CAMTA1-IT1 Gene

Variants for CAMTA1-IT1 Gene

Additional Variant Information for CAMTA1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CAMTA1-IT1
Leiden Open Variation Database (LOVD)
CAMTA1-IT1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CAMTA1-IT1 Gene

Disorders for CAMTA1-IT1 Gene

No disorders were found for CAMTA1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CAMTA1-IT1 Gene

Publications for CAMTA1-IT1 Gene

No publications were found for CAMTA1-IT1 Gene.

Products for CAMTA1-IT1 Gene

Sources for CAMTA1-IT1 Gene