Aliases for CAMTA1-DT Gene

Data sources for CAMTA1-DT Gene:

RNA type for CAMTA1-DT Gene

lncRNA

Aliases for CAMTA1-DT Gene

External Ids for CAMTA1-DT Gene

Summaries for CAMTA1-DT Gene

GeneCards Summary for CAMTA1-DT Gene

CAMTA1-DT (CAMTA1 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CAMTA1-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CAMTA1-DT Gene

Genomics for CAMTA1-DT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CAMTA1-DT Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CAMTA1-DT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CAMTA1-DT Gene

Latest Assembly
chr1:6,781,088-6,785,028
(GRCh38/hg38)
Size:
3,941 bases
Orientation:
Minus strand

Previous Assembly
chr1:6,843,952-6,845,040
(GRCh37/hg19 by Entrez Gene)
Size:
1,089 bases
Orientation:
Minus strand

chr1:6,843,952-6,844,903
(GRCh37/hg19 by Ensembl)
Size:
952 bases
Orientation:
Minus strand

Genomic View for CAMTA1-DT Gene

Genes around CAMTA1-DT on UCSC Golden Path with GeneCards custom track
CAMTA1-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
CAMTA1-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CAMTA1-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CAMTA1-DT Gene

Proteins for CAMTA1-DT Gene

Post-translational modifications for CAMTA1-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for CAMTA1-DT Gene

Domains & Families for CAMTA1-DT Gene

Gene Families for CAMTA1-DT Gene

genes like me logo Genes that share domains with CAMTA1-DT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CAMTA1-DT Gene

Function for CAMTA1-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CAMTA1-DT Gene

Localization for CAMTA1-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CAMTA1-DT Gene

Pathways & Interactions for CAMTA1-DT Gene

PathCards logo

SuperPathways for CAMTA1-DT Gene

No Data Available

Gene Ontology (GO) - Biological Process for CAMTA1-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CAMTA1-DT Gene

Drugs & Compounds for CAMTA1-DT Gene

No Compound Related Data Available

Transcripts for CAMTA1-DT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CAMTA1-DT Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000045E279_9606 lncRNA 415 3

Ensembl: ENST00000442889 (view in UCSC) ,

LNCipedia: CAMTA1-DT:10,

NONCODE: NONHSAT000684.2,

URS0000BC442D_9606 lncRNA 552 1

RefSeq: NR_149049,

URS00008BCBFE_9606 lncRNA 555 2

LNCipedia: CAMTA1-DT:11,

NONCODE: NONHSAT000685.2,

URS0000D5BF2D_9606 lncRNA 554 2

LncBook: HSALNT0001146,

LNCipedia: CAMTA1-DT:9,

URS0000D5C497_9606 lncRNA 3895 1

LNCipedia: CAMTA1-DT:7,

CAMTA1-DT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CAMTA1-DT Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for CAMTA1-DT Gene

No ASD Table

Relevant External Links for CAMTA1-DT Gene

GeneLoc Exon Structure for
CAMTA1-DT

Expression for CAMTA1-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CAMTA1-DT Gene

Orthologs for CAMTA1-DT Gene

Evolution for CAMTA1-DT Gene

ENSEMBL:
Gene Tree for CAMTA1-DT (if available)
TreeFam:
Gene Tree for CAMTA1-DT (if available)
Alliance of Genome Resources:
Additional Orthologs for CAMTA1-DT

No data available for Orthologs for CAMTA1-DT Gene

Paralogs for CAMTA1-DT Gene

No data available for Paralogs for CAMTA1-DT Gene

Variants for CAMTA1-DT Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for CAMTA1-DT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for CAMTA1-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CAMTA1-DT
Leiden Open Variation Database (LOVD)
CAMTA1-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CAMTA1-DT Gene

Disorders for CAMTA1-DT Gene

Additional Disease Information for CAMTA1-DT

No disorders were found for CAMTA1-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CAMTA1-DT Gene

Publications for CAMTA1-DT Gene

  1. Long Noncoding RNA lncCAMTA1 Promotes Proliferation and Cancer Stem Cell-Like Properties of Liver Cancer by Inhibiting CAMTA1. (PMID: 27669232) Ding LJ … Qi L (International journal of molecular sciences 2016) 2 3
  2. Long Noncoding RNA CAMTA1 Promotes Proliferation and Mobility of the Human Breast Cancer Cell Line MDA-MB-231 via Targeting miR-20b. (PMID: 28550685) Lu P … Yang Y (Oncology research 2018) 3
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

Products for CAMTA1-DT Gene

Sources for CAMTA1-DT Gene