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Aliases for CAMTA1-DT Gene

Subcategory (RNA class) for CAMTA1-DT Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CAMTA1-DT Gene

  • CAMTA1 Divergent Transcript 2 3 5
  • LncCAMTA1 3

External Ids for CAMTA1-DT Gene

Summaries for CAMTA1-DT Gene

GeneCards Summary for CAMTA1-DT Gene

CAMTA1-DT (CAMTA1 Divergent Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CAMTA1-DT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CAMTA1-DT Gene

Genomics for CAMTA1-DT Gene

GeneHancer (GH) Regulatory Elements for CAMTA1-DT Gene

Promoters and enhancers for CAMTA1-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J006783 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 650.7 -0.3 -345 3.6 HDGF PKNOX1 CLOCK SMAD1 ZFP64 ARID4B NEUROD1 SIN3A DMAP1 ZNF2 CAMTA1 CAMTA1-DT PHF13 ZBTB48 NOL9
GH01J006819 Enhancer 1.1 Ensembl ENCODE 13 -38.0 -38009 7 HDGF FOXA2 ZSCAN4 MZF1 FEZF1 BATF IRF4 RAD21 YY1 ZNF335 CAMTA1 CAMTA1-DT ENSG00000237365 THAP3 RPL37P9
GH01J006723 Enhancer 1 Ensembl ENCODE 11.1 +60.4 60363 1.9 ELF3 FOXA2 SIN3A DMAP1 ETS1 SCRT2 FOS SP1 NFIL3 RAD51 LINC01672 THAP3 DNAJC11 CAMTA1 CAMTA1-DT GC01P006718
GH01J006720 Enhancer 0.8 ENCODE 12.1 +64.7 64667 0.2 RB1 ARNT ARID4B IRF4 RAD21 YY1 ARID2 ZNF143 BCLAF1 RUNX3 GC01P006718 CAMTA1-DT CAMTA1 LINC01672
GH01J006883 Enhancer 0.8 FANTOM5 ENCODE 11.6 -100.1 -100096 2.5 IKZF1 ZSCAN4 JUNB MEF2B IKZF2 BCL11B CAMTA1 CAMTA1-DT ENSG00000237365 RPL37P9 PIR37758
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CAMTA1-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for CAMTA1-DT Gene

Genomic Locations for CAMTA1-DT Gene
chr1:6,783,892-6,784,843
(GRCh38/hg38)
Size:
952 bases
Orientation:
Minus strand
chr1:6,843,952-6,844,903
(GRCh37/hg19)
Size:
952 bases
Orientation:
Minus strand

Genomic View for CAMTA1-DT Gene

Genes around CAMTA1-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CAMTA1-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CAMTA1-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CAMTA1-DT Gene

Proteins for CAMTA1-DT Gene

Post-translational modifications for CAMTA1-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for CAMTA1-DT Gene

Domains & Families for CAMTA1-DT Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CAMTA1-DT Gene

Function for CAMTA1-DT Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CAMTA1-DT Gene

Localization for CAMTA1-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CAMTA1-DT Gene

Pathways & Interactions for CAMTA1-DT Gene

SuperPathways for CAMTA1-DT Gene

No Data Available

Interacting Proteins for CAMTA1-DT Gene

Gene Ontology (GO) - Biological Process for CAMTA1-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CAMTA1-DT Gene

Drugs & Compounds for CAMTA1-DT Gene

No Compound Related Data Available

Transcripts for CAMTA1-DT Gene

mRNA/cDNA for CAMTA1-DT Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CAMTA1-DT Gene

No ASD Table

Relevant External Links for CAMTA1-DT Gene

GeneLoc Exon Structure for
CAMTA1-DT
ECgene alternative splicing isoforms for
CAMTA1-DT

Expression for CAMTA1-DT Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CAMTA1-DT Gene

Orthologs for CAMTA1-DT Gene

Evolution for CAMTA1-DT Gene

ENSEMBL:
Gene Tree for CAMTA1-DT (if available)
TreeFam:
Gene Tree for CAMTA1-DT (if available)

No data available for Orthologs for CAMTA1-DT Gene

Paralogs for CAMTA1-DT Gene

No data available for Paralogs for CAMTA1-DT Gene

Variants for CAMTA1-DT Gene

Additional Variant Information for CAMTA1-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CAMTA1-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CAMTA1-DT Gene

Disorders for CAMTA1-DT Gene

No disorders were found for CAMTA1-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CAMTA1-DT Gene

Publications for CAMTA1-DT Gene

  1. Long Noncoding RNA lncCAMTA1 Promotes Proliferation and Cancer Stem Cell-Like Properties of Liver Cancer by Inhibiting CAMTA1. (PMID: 27669232) Ding LJ … Qi L (International journal of molecular sciences 2016) 2 3 58
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for CAMTA1-DT Gene

Sources for CAMTA1-DT Gene

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