Aliases for CAMTA1-AS2 Gene

Data sources for CAMTA1-AS2 Gene:

RNA type for CAMTA1-AS2 Gene

lncRNA

Aliases for CAMTA1-AS2 Gene

External Ids for CAMTA1-AS2 Gene

Summaries for CAMTA1-AS2 Gene

GeneCards Summary for CAMTA1-AS2 Gene

CAMTA1-AS2 (CAMTA1 Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CAMTA1-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CAMTA1-AS2 Gene

Genomics for CAMTA1-AS2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CAMTA1-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J007401 Enhancer 1.3 FANTOM5 Ensembl ENCODE 12.4 -12.1 -12051 2.7 IKZF1 ZNF600 JUND ATF2 ZNF10 BRCA1 ZIC2 CEBPB DEK FEZF1 HSALNG0000561 NOL9 CAMTA1-AS2 CAMTA1-AS1 VAMP3 CAMTA1
GH01J007388 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 16 +2.1 2108 4 ZIC2 CTBP1 SIN3A SMARCE1 DPF2 RFX1 ZNF687 EGR2 ZFX MTA1 CAMTA1-AS2 piR-48209-014 VAMP3 CAMTA1
GH01J007378 Enhancer 0.8 ENCODE CraniofacialAtlas 12.2 +10.6 10633 2.3 EZH2 ATF2 POLR2A CEBPB MAX EP300 PRDM1 RFX5 SMC3 STAT3 HSALNG0000560 piR-48209-014 CAMTA1-AS2 CAMTA1-IT1 VAMP3 CAMTA1
GH01J007373 Enhancer 0.5 Ensembl CraniofacialAtlas 11.3 +15.9 15908 2 RFX1 BMI1 CAMTA1-AS2 CAMTA1-AS1 HSALNG0000560 CAMTA1-IT1 VAMP3 CAMTA1
GH01J007333 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 4.7 +55.3 55308 3.2 ZNF600 ATF2 BRCA1 YY1 CEBPB ZNF341 MAX EP300 CUX1 TCF7L2 HSALNG0000558 CAMTA1-AS2 CAMTA1-IT1 VAMP3 CAMTA1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CAMTA1-AS2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CAMTA1-AS2 Gene

Latest Assembly
chr1:7,379,310-7,390,509
(GRCh38/hg38)
Size:
11,200 bases
Orientation:
Minus strand

Previous Assembly
chr1:7,442,548-7,449,814
(GRCh37/hg19 by Entrez Gene)
Size:
7,267 bases
Orientation:
Minus strand

chr1:7,442,548-7,449,814
(GRCh37/hg19 by Ensembl)
Size:
7,267 bases
Orientation:
Minus strand

Genomic View for CAMTA1-AS2 Gene

Genes around CAMTA1-AS2 on UCSC Golden Path with GeneCards custom track
CAMTA1-AS2 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
CAMTA1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CAMTA1-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CAMTA1-AS2 Gene

Proteins for CAMTA1-AS2 Gene

Post-translational modifications for CAMTA1-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CAMTA1-AS2 Gene

Domains & Families for CAMTA1-AS2 Gene

Gene Families for CAMTA1-AS2 Gene

genes like me logo Genes that share domains with CAMTA1-AS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CAMTA1-AS2 Gene

Function for CAMTA1-AS2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CAMTA1-AS2 Gene

Localization for CAMTA1-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CAMTA1-AS2 Gene

Pathways & Interactions for CAMTA1-AS2 Gene

PathCards logo

SuperPathways for CAMTA1-AS2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CAMTA1-AS2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CAMTA1-AS2 Gene

Drugs & Compounds for CAMTA1-AS2 Gene

No Compound Related Data Available

Transcripts for CAMTA1-AS2 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CAMTA1-AS2 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000077C601_9606 lncRNA 436 4

RefSeq: NR_146199,

Ensembl: ENST00000618051 (view in UCSC) ,

LNCipedia: lnc-UTS2-3:1,

NONCODE: NONHSAT000700.2,

URS0000285D80_9606 lncRNA 393 4

Ensembl: ENST00000411708 (view in UCSC) ,

LncBook: HSALNT0001175,

LNCipedia: lnc-UTS2-3:2,

NONCODE: NONHSAT000703.2,

URS0000ABD809_9606 lncRNA 507 1

RefSeq: NR_146200,

URS0000ABD873_9606 lncRNA 451 1

RefSeq: NR_146201,

URS00008B3A26_9606 lncRNA 828 3

LncBook: HSALNT0001173,

LNCipedia: lnc-UTS2-3:3,

NONCODE: NONHSAT000702.2,

CAMTA1-AS2 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CAMTA1-AS2 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for CAMTA1-AS2 Gene

No ASD Table

Relevant External Links for CAMTA1-AS2 Gene

GeneLoc Exon Structure for
CAMTA1-AS2

Expression for CAMTA1-AS2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CAMTA1-AS2 Gene

Orthologs for CAMTA1-AS2 Gene

Evolution for CAMTA1-AS2 Gene

ENSEMBL:
Gene Tree for CAMTA1-AS2 (if available)
TreeFam:
Gene Tree for CAMTA1-AS2 (if available)
Alliance of Genome Resources:
Additional Orthologs for CAMTA1-AS2

No data available for Orthologs for CAMTA1-AS2 Gene

Paralogs for CAMTA1-AS2 Gene

No data available for Paralogs for CAMTA1-AS2 Gene

Variants for CAMTA1-AS2 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for CAMTA1-AS2 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for CAMTA1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CAMTA1-AS2
Leiden Open Variation Database (LOVD)
CAMTA1-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CAMTA1-AS2 Gene

Disorders for CAMTA1-AS2 Gene

No disorders were found for CAMTA1-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CAMTA1-AS2 Gene

Publications for CAMTA1-AS2 Gene

No publications were found for CAMTA1-AS2 Gene.

No data available for Mastermind for CAMTA1-AS2 Gene

Products for CAMTA1-AS2 Gene

Sources for CAMTA1-AS2 Gene