Aliases for CALML3-AS1 Gene

Data sources for CALML3-AS1 Gene:

RNA type for CALML3-AS1 Gene

lncRNA

Aliases for CALML3-AS1 Gene

External Ids for CALML3-AS1 Gene

Previous GeneCards Identifiers for CALML3-AS1 Gene

  • GC10M005556

Summaries for CALML3-AS1 Gene

GeneCards Summary for CALML3-AS1 Gene

CALML3-AS1 (CALML3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CALML3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CALML3-AS1 Gene

Genomics for CALML3-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CALML3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J005525 Promoter/Enhancer 0.8 Ensembl ENCODE dbSUPER 258.4 +0.5 492 1.9 ZBTB33 CALML3 CALML3-AS1 ENSG00000256462 ASB13
GH10J005527 Enhancer 0.8 Ensembl ENCODE dbSUPER 250.7 -1.7 -1655 0.2 RXRA HNF4A HNRNPL ZFX ZBTB33 CALML3-AS1 CALML3 LOC107984169 ASB13
GH10J005543 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 26.6 -23.5 -23484 11.7 IKZF1 MYC ZNF600 NCOR1 SSRP1 JUND ZNF580 ZNF592 ZMYM3 ATF2 TASOR2 CALML3-AS1 FBH1 ENSG00000232807 CALML3 NRBF2P5 ENSG00000256462 CALML5 ANKRD16 ENSG00000226647
GH10J005444 Promoter/Enhancer 2.6 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 11.2 +78.3 78313 7 MYC NCOR1 IKZF1 ZNF600 ZNF580 ZNF592 KLF9 POLR2A CEBPA NFIC NET1 NRBF2P5 TUBAL3 ENSG00000232807 FBH1 TASOR2 CALML5 ENSG00000256462 CALML3 CALML3-AS1
GH10J005486 Promoter/Enhancer 1.4 EPDnew ENCODE dbSUPER 17.4 +38.0 37962 4.5 MYC IKZF1 ZNF217 SMAD5 MBD2 ZBTB7B CTBP1 NBN NKRF ELF1 TUBAL3 CALML3-AS1 FBH1 ENSG00000226647 TASOR2 CALML3 ENSG00000256462 AKR1E2 CALML5 UCN3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CALML3-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CALML3-AS1 Gene

Latest Assembly
chr10:5,506,901-5,526,246
(GRCh38/hg38)
Size:
19,346 bases
Orientation:
Minus strand

Previous Assembly
chr10:5,556,207-5,568,209
(GRCh37/hg19 by Entrez Gene)
Size:
12,003 bases
Orientation:
Minus strand

chr10:5,556,207-5,568,209
(GRCh37/hg19 by Ensembl)
Size:
12,003 bases
Orientation:
Minus strand

Genomic View for CALML3-AS1 Gene

Genes around CALML3-AS1 on UCSC Golden Path with GeneCards custom track
CALML3-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
CALML3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CALML3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CALML3-AS1 Gene

Proteins for CALML3-AS1 Gene

Post-translational modifications for CALML3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CALML3-AS1 Gene

Domains & Families for CALML3-AS1 Gene

Gene Families for CALML3-AS1 Gene

genes like me logo Genes that share domains with CALML3-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CALML3-AS1 Gene

Function for CALML3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CALML3-AS1 Gene

Localization for CALML3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CALML3-AS1 Gene

Pathways & Interactions for CALML3-AS1 Gene

PathCards logo

SuperPathways for CALML3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CALML3-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CALML3-AS1 Gene

Drugs & Compounds for CALML3-AS1 Gene

No Compound Related Data Available

Transcripts for CALML3-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CALML3-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000048B54E_9606 lncRNA 560 4

Ensembl: ENST00000542093 (view in UCSC) ,

LncBook: HSALNT0158189,

LNCipedia: CALML3-AS1:1,

NONCODE: NONHSAT011156.2,

URS0000319499_9606 lncRNA 583 3

Ensembl: ENST00000545372 (view in UCSC) ,

LNCipedia: CALML3-AS1:4,

NONCODE: NONHSAT011157.2,

URS000075E62E_9606 lncRNA 3713 2

RefSeq: NR_120496,

LNCipedia: CALML3-AS1:3,

URS000075B44D_9606 lncRNA 3597 2

RefSeq: NR_120497,

LNCipedia: CALML3-AS1:2,

URS0000E70E23_9606 lncRNA 8739 1

Ensembl: ENST00000543008 (view in UCSC) ,

CALML3-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CALML3-AS1 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for CALML3-AS1 Gene

No ASD Table

Relevant External Links for CALML3-AS1 Gene

GeneLoc Exon Structure for
CALML3-AS1

Expression for CALML3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CALML3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CALML3-AS1 Gene

This gene is overexpressed in Esophagus - Mucosa (x16.8), Skin - Not Sun Exposed (Suprapubic) (x7.6), Vagina (x7.4), Skin - Sun Exposed (Lower leg) (x7.4), and Cervix - Ectocervix (x4.1).

Protein differential expression in normal tissues from HIPED for CALML3-AS1 Gene

This gene is overexpressed in Serum (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for CALML3-AS1 Gene



Protein tissue co-expression partners for CALML3-AS1 Gene

- Elite partner

SOURCE GeneReport for Unigene cluster for CALML3-AS1 Gene:

Hs.678826
genes like me logo Genes that share expression patterns with CALML3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CALML3-AS1 Gene

Orthologs for CALML3-AS1 Gene

Evolution for CALML3-AS1 Gene

ENSEMBL:
Gene Tree for CALML3-AS1 (if available)
TreeFam:
Gene Tree for CALML3-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for CALML3-AS1

No data available for Orthologs for CALML3-AS1 Gene

Paralogs for CALML3-AS1 Gene

No data available for Paralogs for CALML3-AS1 Gene

Variants for CALML3-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for CALML3-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for CALML3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv664n100 CNV gain 25217958
esv1329930 CNV insertion 17803354
esv2759729 CNV gain 17122850
nsv1051283 CNV gain 25217958
nsv523491 CNV gain 19592680
nsv549886 CNV loss 21841781
nsv831774 CNV gain 17160897

Additional Variant Information for CALML3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CALML3-AS1
Leiden Open Variation Database (LOVD)
CALML3-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CALML3-AS1 Gene

Disorders for CALML3-AS1 Gene

Additional Disease Information for CALML3-AS1

No disorders were found for CALML3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CALML3-AS1 Gene

Publications for CALML3-AS1 Gene

  1. Upregulation of lncRNA CALML3-AS1 promotes cell proliferation and metastasis in cervical cancer via activation of the Wnt/β-catenin pathway. (PMID: 31298313) Liu CN … Wang CC (European review for medical and pharmacological sciences 2019) 2 3
  2. LncRNA CALML3-AS1 promotes tumorigenesis of bladder cancer via regulating ZBTB2 by suppression of microRNA-4316. (PMID: 30177388) Wang F … Yang Y (Biochemical and biophysical research communications 2018) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for CALML3-AS1 Gene

Sources for CALML3-AS1 Gene