Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CALML3-AS1 Gene

Subcategory (RNA class) for CALML3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CALML3-AS1 Gene

  • CALML3 Antisense RNA 1 2 3 5

External Ids for CALML3-AS1 Gene

Previous GeneCards Identifiers for CALML3-AS1 Gene

  • GC10M005556

Summaries for CALML3-AS1 Gene

GeneCards Summary for CALML3-AS1 Gene

CALML3-AS1 (CALML3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CALML3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CALML3-AS1 Gene

Genomics for CALML3-AS1 Gene

GeneHancer (GH) Regulatory Elements for CALML3-AS1 Gene

Promoters and enhancers for CALML3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J005527 Enhancer 0.7 ENCODE dbSUPER 650.7 -1.6 -1637 0 RXRA HNF4A ZBTB33 ZFX CALML3-AS1 LOC105376380
GH10J005525 Enhancer 0.5 ENCODE dbSUPER 658.5 +0.0 31 1 ZBTB33 CALML3-AS1 ENSG00000256462 CALML3
GH10J005543 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 26.6 -23.5 -23484 11.7 CLOCK FEZF1 DMAP1 YY1 E2F8 ZNF143 MCM3 SP3 MEF2D SSRP1 FAM208B FBH1 LOC105376384 CALML3-AS1 ENSG00000226647 CALML3 NRBF2P5 ENSG00000256462 GDI2 CALML5
GH10J005444 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 11.2 +78.3 78313 7 HDGF PKNOX1 CLOCK SMAD1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 NET1 LOC105376384 NRBF2P5 FAM208B TUBAL3 GDI2 FBH1 RBM17 CALML5 CALML3
GH10J005486 Promoter/Enhancer 1.6 EPDnew ENCODE dbSUPER 17.4 +38.0 37962 4.5 HDGF PKNOX1 CLOCK NEUROD1 SIN3A ZBTB7B CBX5 ARID2 E2F8 FOS TUBAL3 CALML3-AS1 FBH1 ENSG00000226647 FAM208B CALML3 ENSG00000256462 AKR1E2 CALML5 UCN3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CALML3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CALML3-AS1 Gene

Genomic Locations for CALML3-AS1 Gene
chr10:5,514,244-5,526,246
(GRCh38/hg38)
Size:
12,003 bases
Orientation:
Minus strand
chr10:5,556,207-5,568,209
(GRCh37/hg19)

Genomic View for CALML3-AS1 Gene

Genes around CALML3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CALML3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CALML3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CALML3-AS1 Gene

Proteins for CALML3-AS1 Gene

Post-translational modifications for CALML3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CALML3-AS1 Gene

Domains & Families for CALML3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CALML3-AS1 Gene

Function for CALML3-AS1 Gene

Phenotypes From GWAS Catalog for CALML3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CALML3-AS1 Gene

Localization for CALML3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CALML3-AS1 Gene

Pathways & Interactions for CALML3-AS1 Gene

SuperPathways for CALML3-AS1 Gene

No Data Available

Interacting Proteins for CALML3-AS1 Gene

Gene Ontology (GO) - Biological Process for CALML3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CALML3-AS1 Gene

Drugs & Compounds for CALML3-AS1 Gene

No Compound Related Data Available

Transcripts for CALML3-AS1 Gene

mRNA/cDNA for CALML3-AS1 Gene

(5) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(5) RNA Central transcripts :

Unigene Clusters for CALML3-AS1 Gene

CALML3 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CALML3-AS1 Gene

No ASD Table

Relevant External Links for CALML3-AS1 Gene

GeneLoc Exon Structure for
CALML3-AS1
ECgene alternative splicing isoforms for
CALML3-AS1

Expression for CALML3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CALML3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CALML3-AS1 Gene

This gene is overexpressed in Esophagus - Mucosa (x16.8), Skin - Not Sun Exposed (Suprapubic) (x7.6), Vagina (x7.4), Skin - Sun Exposed (Lower leg) (x7.4), and Cervix - Ectocervix (x4.1).

Protein differential expression in normal tissues from HIPED for CALML3-AS1 Gene

This gene is overexpressed in Serum (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for CALML3-AS1 Gene



Protein tissue co-expression partners for CALML3-AS1 Gene

- Elite partner

SOURCE GeneReport for Unigene cluster for CALML3-AS1 Gene:

Hs.678826
genes like me logo Genes that share expression patterns with CALML3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CALML3-AS1 Gene

Orthologs for CALML3-AS1 Gene

Evolution for CALML3-AS1 Gene

ENSEMBL:
Gene Tree for CALML3-AS1 (if available)
TreeFam:
Gene Tree for CALML3-AS1 (if available)

No data available for Orthologs for CALML3-AS1 Gene

Paralogs for CALML3-AS1 Gene

No data available for Paralogs for CALML3-AS1 Gene

Variants for CALML3-AS1 Gene

Sequence variations from dbSNP and Humsavar for CALML3-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000009372 -- 5,523,959(-) G/A/C intron_variant
rs1000037316 -- 5,514,381(-) G/A non_coding_transcript_variant
rs1000452149 -- 5,527,926(-) G/A upstream_transcript_variant
rs1001582936 -- 5,517,625(-) GGGG/GGG intron_variant
rs1001699674 -- 5,527,125(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CALML3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv664n100 CNV gain 25217958
esv1329930 CNV insertion 17803354
esv2759729 CNV gain 17122850
nsv1051283 CNV gain 25217958
nsv523491 CNV gain 19592680
nsv549886 CNV loss 21841781
nsv831774 CNV gain 17160897

Additional Variant Information for CALML3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CALML3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CALML3-AS1 Gene

Disorders for CALML3-AS1 Gene

Additional Disease Information for CALML3-AS1

No disorders were found for CALML3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CALML3-AS1 Gene

Publications for CALML3-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for CALML3-AS1 Gene

Sources for CALML3-AS1 Gene

Content
Loading form....