Aliases for CALM2P1 Gene

Aliases for CALM2P1 Gene

  • Calmodulin 2 Pseudogene 1 2 3 5

External Ids for CALM2P1 Gene

Previous GeneCards Identifiers for CALM2P1 Gene

  • GC17U990010
  • GC17P065751
  • GC17P068232

Summaries for CALM2P1 Gene

GeneCards Summary for CALM2P1 Gene

CALM2P1 (Calmodulin 2 Pseudogene 1) is a Pseudogene.

Additional gene information for CALM2P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CALM2P1 Gene

Genomics for CALM2P1 Gene

GeneHancer (GH) Regulatory Elements for CALM2P1 Gene

Promoters and enhancers for CALM2P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J070239 Enhancer 0.5 ENCODE 500.7 -1.5 -1512 0.2 TCF12 FOSL2 JUND TRIM28 ZFP36 BCL3 FOXA1 CEBPB REST SP1 CALM2P1 lnc-ABCA5-13
GH17J070230 Enhancer 0.5 Ensembl 0.4 -9.9 -9946 1.4 JUND FOS CEBPB ATF2 ATF3 JUN lnc-ABCA5-13 CALM2P1
GH17J070265 Enhancer 0.5 FANTOM5 Ensembl 0.4 +24.7 24654 2.6 HLF KCNJ2 CALM2P1 lnc-KCNJ2-6
GH17J070254 Enhancer 0.3 Ensembl 0.4 +14.0 13953 1.6 FOS SMARCA4 CALM2P1 lnc-KCNJ2-6
GH17J070270 Enhancer 0.4 Ensembl 0.3 +29.6 29554 1.2 CREB1 ATF2 EZH2 KCNJ2 lnc-KCNJ2-6 CALM2P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CALM2P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CALM2P1 Gene

Genomic Locations for CALM2P1 Gene
chr17:70,241,247-70,242,378
(GRCh38/hg38)
Size:
1,132 bases
Orientation:
Plus strand
chr17:68,237,410-68,238,524
(GRCh37/hg19)
Size:
1,115 bases
Orientation:
Plus strand

Genomic View for CALM2P1 Gene

Genes around CALM2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CALM2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CALM2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CALM2P1 Gene

Proteins for CALM2P1 Gene

Post-translational modifications for CALM2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CALM2P1 Gene

Domains & Families for CALM2P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CALM2P1 Gene

Function for CALM2P1 Gene

Molecular function for CALM2P1 Gene

GENATLAS Biochemistry:
calmodulin 2,pseudogene 1

Phenotypes From GWAS Catalog for CALM2P1 Gene

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CALM2P1 Gene

Localization for CALM2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CALM2P1 Gene

Pathways & Interactions for CALM2P1 Gene

PathCards logo

SuperPathways for CALM2P1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for CALM2P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CALM2P1 Gene

Drugs & Compounds for CALM2P1 Gene

No Compound Related Data Available

Transcripts for CALM2P1 Gene

mRNA/cDNA for CALM2P1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CALM2P1 Gene

No ASD Table

Relevant External Links for CALM2P1 Gene

GeneLoc Exon Structure for
CALM2P1

Expression for CALM2P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CALM2P1 Gene

genes like me logo Genes that share expression patterns with CALM2P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CALM2P1 Gene

Orthologs for CALM2P1 Gene

Evolution for CALM2P1 Gene

ENSEMBL:
Gene Tree for CALM2P1 (if available)
TreeFam:
Gene Tree for CALM2P1 (if available)

No data available for Orthologs for CALM2P1 Gene

Paralogs for CALM2P1 Gene

No data available for Paralogs for CALM2P1 Gene

Variants for CALM2P1 Gene

Additional Variant Information for CALM2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CALM2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CALM2P1 Gene

Disorders for CALM2P1 Gene

Additional Disease Information for CALM2P1

Genetic Association Database
(GAD)

No disorders were found for CALM2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CALM2P1 Gene

Publications for CALM2P1 Gene

  1. A calmodulin pseudogene on human chromosome 17. (PMID: 2717417) Sen Gupta B … Friedberg F (Nucleic acids research 1989) 2 3 54
  2. Genetic variation in prostate-specific antigen-detected prostate cancer and the effect of control selection on genetic association studies. (PMID: 24753544) Knipe DW … Martin RM (Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2014) 3 54
  3. A common variant near the KCNJ2 gene is associated with T-peak to T-end interval. (PMID: 22342860) Marjamaa A … Salomaa V (Heart rhythm 2012) 41 54
  4. A genome-wide association study identifies novel susceptibility genetic variation for thyrotoxic hypokalemic periodic paralysis. (PMID: 22399142) Jongjaroenprasert W … Nakamura Y (Journal of human genetics 2012) 41 54
  5. Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma. (PMID: 22001757) Chambers JC … Kooner JS (Nature genetics 2011) 41 54

Products for CALM2P1 Gene

Sources for CALM2P1 Gene