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Aliases for CALCP Gene
External Ids for CALCP Gene
- HGNC: 1439
- Entrez Gene: 798
- Ensembl: ENSG00000253179
Previous GeneCards Identifiers for CALCP Gene
- GC11U990015
- GC11P014893
- GC11P014885
- GC11P014928
- GC11P014611
Summaries for CALCP Gene
GeneCards Summary for CALCP Gene
CALCP (Calcitonin Pseudogene) is a Pseudogene.
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CALCP Gene
Genomics for CALCP Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for CALCP Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH11J014908 | Promoter/Enhancer | 1.2 | Ensembl ENCODE | 600.7 | +0.4 | 403 | 0.2 | HNRNPL GATAD2A CTCF ZNF143 ZIC2 PATZ1 REST RAD21 SCRT2 CTBP1 | CALCP lnc-PDE3B-2 COPB1 CALCB lnc-PDE3B-1 CALCA | |
| GH11J014907 | Enhancer | 0.7 | ENCODE | 600.7 | +0.0 | 2 | 0.2 | FOXA1 PATZ1 CTCF SCRT2 FOXA2 BCL11A KAT7 ZBTB48 SCRT1 PCBP1 | CALCP lnc-PDE3B-2 CALCB CALCA | |
| GH11J014882 | Enhancer | 0.4 | Ensembl | 12 | -25.1 | -25098 | 0.4 | CEBPG SOX6 IKZF1 | MN309174-074 piR-41525-088 CALCB CALCP lnc-CALCA-2 CYP2R1 piR-41525-087 PDE3B | |
| GH11J014534 | Enhancer | 0.4 | Ensembl | 10.7 | -373.0 | -372998 | 0.6 | CEBPG ATF4 ATF2 HNF4A | PDE3B PSMA1 CALCB CALCP COPB1 lnc-COPB1-35 piR-32559-064 ENSG00000256206 | |
| GH11J014746 | Enhancer | 0.4 | Ensembl | 10.7 | -160.7 | -160699 | 1.2 | OSR2 NFIC HIC1 ZBTB49 | COPB1 CALCB CALCP piR-37026-080 piR-39858-074 PDE3B CYP2R1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around CALCP on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for CALCP Gene
Genomic Locations for CALCP Gene
- chr11:14,907,499-14,907,999
- (GRCh38/hg38)
- Size:
- 501 bases
- Orientation:
- Plus strand
- chr11:14,929,045-14,929,545
- (GRCh37/hg19)
- Size:
- 501 bases
- Orientation:
- Plus strand
Genomic View for CALCP Gene
Genes around CALCP on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 11p15.2 by HGNC
- 11p15.2 by Entrez Gene
- 11p15.2 by Ensembl
CALCP Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for CALCP Gene
Proteins for CALCP Gene
Post-translational modifications for CALCP Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CALCP
- Origene Custom Protein Services for CALCP
No data available for DME Specific Peptides for CALCP Gene
Domains & Families for CALCP Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CALCP Gene
Function for CALCP Gene
Molecular function for CALCP Gene
- GENATLAS Biochemistry:
- calcitonin pseudogene
Phenotypes From GWAS Catalog for CALCP Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for CALCP - Select products 50% OFF >
- * CALCP CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for CALCP
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CALCP Gene
Localization for CALCP Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CALCP Gene
Transcripts for CALCP Gene
mRNA/cDNA for CALCP Gene
- 1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000522108 212 nts (view in UCSC)
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for CALCP - Select products 50% OFF >
- * CALCP CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for CALCP
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for CALCP Gene
- GeneLoc Exon Structure for
- CALCP
Expression for CALCP Gene
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CALCP Gene
Orthologs for CALCP Gene
No data available for Orthologs for CALCP Gene
Paralogs for CALCP Gene
No data available for Paralogs for CALCP Gene
Variants for CALCP Gene
Additional Variant Information for CALCP Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- CALCP
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CALCP Gene
Disorders for CALCP Gene
No disorders were found for CALCP Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CALCP Gene
Publications for CALCP Gene
- A third human CALC (pseudo)gene on chromosome 11. (PMID: 2898385) Höppener JW … Jansz HS (FEBS letters 1988) 2 3
- Genome-wide association study of vitamin D levels in children: replication in the Western Australian Pregnancy Cohort (Raine) study. (PMID: 25208829) Anderson D … Blackwell JM (Genes and immunity 2014) 3
- High-resolution chromosomal localization of the human calcitonin/CGRP/IAPP gene family members. (PMID: 8468047) Hoovers JM … Mannens M (Genomics 1993) 3
ExternalLinks
Products for CALCP Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CALCP
- Origene Custom Protein Services for CALCP
- Browse OriGene Inhibitory RNA Products For CALCP
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for CALCP
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For CALCP
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for CALCP
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for CALCP
- Search GeneCopoeia for miRNA 3'UTR Target clone products for CALCP
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for CALCP
Sources for CALCP Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB