Aliases for CALCP Gene

Aliases for CALCP Gene

  • Calcitonin Pseudogene 2 3 5
  • CALC3 2 3
  • CALCP 5

External Ids for CALCP Gene

Previous GeneCards Identifiers for CALCP Gene

  • GC11U990015
  • GC11P014893
  • GC11P014885
  • GC11P014928
  • GC11P014611

Summaries for CALCP Gene

GeneCards Summary for CALCP Gene

CALCP (Calcitonin Pseudogene) is a Pseudogene.

Additional gene information for CALCP Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CALCP Gene

Genomics for CALCP Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CALCP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J014908 Promoter/Enhancer 1.2 Ensembl ENCODE 600.7 +0.4 403 0.2 HNRNPL GATAD2A CTCF ZNF143 ZIC2 PATZ1 REST RAD21 SCRT2 CTBP1 CALCP lnc-PDE3B-2 COPB1 CALCB lnc-PDE3B-1 CALCA
GH11J014907 Enhancer 0.7 ENCODE 600.7 +0.0 2 0.2 FOXA1 PATZ1 CTCF SCRT2 FOXA2 BCL11A KAT7 ZBTB48 SCRT1 PCBP1 CALCP lnc-PDE3B-2 CALCB CALCA
GH11J014882 Enhancer 0.4 Ensembl 12 -25.1 -25098 0.4 CEBPG SOX6 IKZF1 MN309174-074 piR-41525-088 CALCB CALCP lnc-CALCA-2 CYP2R1 piR-41525-087 PDE3B
GH11J014534 Enhancer 0.4 Ensembl 10.7 -373.0 -372998 0.6 CEBPG ATF4 ATF2 HNF4A PDE3B PSMA1 CALCB CALCP COPB1 lnc-COPB1-35 piR-32559-064 ENSG00000256206
GH11J014746 Enhancer 0.4 Ensembl 10.7 -160.7 -160699 1.2 OSR2 NFIC HIC1 ZBTB49 COPB1 CALCB CALCP piR-37026-080 piR-39858-074 PDE3B CYP2R1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CALCP on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CALCP Gene

Genomic Locations for CALCP Gene
chr11:14,907,499-14,907,999
(GRCh38/hg38)
Size:
501 bases
Orientation:
Plus strand
chr11:14,929,045-14,929,545
(GRCh37/hg19)
Size:
501 bases
Orientation:
Plus strand

Genomic View for CALCP Gene

Genes around CALCP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CALCP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CALCP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CALCP Gene

Proteins for CALCP Gene

No data available for DME Specific Peptides for CALCP Gene

Domains & Families for CALCP Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CALCP Gene

Function for CALCP Gene

Molecular function for CALCP Gene

GENATLAS Biochemistry:
calcitonin pseudogene

Phenotypes From GWAS Catalog for CALCP Gene

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CALCP Gene

Localization for CALCP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CALCP Gene

Pathways & Interactions for CALCP Gene

PathCards logo

SuperPathways for CALCP Gene

No Data Available

Gene Ontology (GO) - Biological Process for CALCP Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CALCP Gene

Drugs & Compounds for CALCP Gene

No Compound Related Data Available

Transcripts for CALCP Gene

mRNA/cDNA for CALCP Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CALCP Gene

No ASD Table

Relevant External Links for CALCP Gene

GeneLoc Exon Structure for
CALCP

Expression for CALCP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CALCP Gene

genes like me logo Genes that share expression patterns with CALCP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CALCP Gene

Orthologs for CALCP Gene

Evolution for CALCP Gene

ENSEMBL:
Gene Tree for CALCP (if available)
TreeFam:
Gene Tree for CALCP (if available)

No data available for Orthologs for CALCP Gene

Paralogs for CALCP Gene

No data available for Paralogs for CALCP Gene

Variants for CALCP Gene

Additional Variant Information for CALCP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CALCP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CALCP Gene

Disorders for CALCP Gene

No disorders were found for CALCP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CALCP Gene

Publications for CALCP Gene

  1. A third human CALC (pseudo)gene on chromosome 11. (PMID: 2898385) Höppener JW … Jansz HS (FEBS letters 1988) 2 3
  2. Genome-wide association study of vitamin D levels in children: replication in the Western Australian Pregnancy Cohort (Raine) study. (PMID: 25208829) Anderson D … Blackwell JM (Genes and immunity 2014) 3
  3. High-resolution chromosomal localization of the human calcitonin/CGRP/IAPP gene family members. (PMID: 8468047) Hoovers JM … Mannens M (Genomics 1993) 3

Products for CALCP Gene

Sources for CALCP Gene