Aliases for CAHM Gene

Subcategory (RNA class) for CAHM Gene


Number of RNA Genes sources:

3 / 14

Aliases for CAHM Gene

  • Colon Adenocarcinoma Hypermethylated 2 3 5
  • Colon Adenocarcinoma Hypermethylated (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 468 2 3
  • CAHM 2 168
  • NONHSAG045349 92
  • HSALNG0054937 167
  • LINC00468 3

External Ids for CAHM Gene

Previous GeneCards Identifiers for CAHM Gene

  • GC06U902263
  • GC06M163836

Summaries for CAHM Gene

GeneCards Summary for CAHM Gene

CAHM (Colon Adenocarcinoma Hypermethylated) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CAHM include Colorectal Cancer and Astrocytoma.

Additional gene information for CAHM Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CAHM Gene

Genomics for CAHM Gene

GeneHancer (GH) Regulatory Elements for CAHM Gene

Promoters and enhancers for CAHM Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J163412 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -3.8 -3792 12.6 EP300 HNRNPK ZBTB40 CTCF SIN3A NRF1 POLR2G USF1 NCOR1 PHF8 QKI PACRG-AS3 CAHM lnc-PRKN-23 lnc-QKI-6 lnc-PACRG-2
GH06J163404 Enhancer 1.5 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.4 +8.7 8692 3.3 USF1 POLR2G TGIF2 SKI TEAD1 ZBTB26 ZSCAN9 KMT2B KLF9 ZNF316 lnc-PRKN-22 QKI PACRG-AS3 CAHM lnc-PRKN-23 lnc-QKI-6
GH06J163408 Enhancer 0.9 dbSUPER 0.7 +4.8 4823 1.8 POLR2G NCOR1 KDM6A TCF7 ZBTB25 TGIF2 ZBTB7A TEAD1 ZKSCAN8 ZSCAN9 lnc-QKI-6 PACRG-AS3 CAHM lnc-PRKN-22 lnc-PRKN-23
GH06J163411 Enhancer 0.6 dbSUPER 0.7 +3.2 3213 0.6 ZBTB7A FOXA2 SMAD4 PRDM10 DMAP1 TEAD3 YY1 GTF2F1 GATAD2A EP300 lnc-QKI-6 PACRG-AS3 CAHM lnc-PRKN-23 lnc-PRKN-22
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CAHM on UCSC Golden Path with GeneCards custom track

Genomic Locations for CAHM Gene

Genomic Locations for CAHM Gene
12,080 bases
Minus strand
896 bases
Minus strand

Genomic View for CAHM Gene

Genes around CAHM on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CAHM Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CAHM Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CAHM Gene

Proteins for CAHM Gene

No data available for DME Specific Peptides for CAHM Gene

Domains & Families for CAHM Gene

Gene Families for CAHM Gene

genes like me logo Genes that share domains with CAHM: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CAHM Gene

Function for CAHM Gene

Phenotypes From GWAS Catalog for CAHM Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CAHM Gene

Localization for CAHM Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CAHM Gene

Pathways & Interactions for CAHM Gene

PathCards logo

SuperPathways for CAHM Gene

No Data Available

Gene Ontology (GO) - Biological Process for CAHM Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CAHM Gene

Drugs & Compounds for CAHM Gene

No Compound Related Data Available

Transcripts for CAHM Gene

mRNA/cDNA for CAHM Gene

10 RNACentral transcripts :
4 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
2 LncBook transcripts :
8 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CAHM Gene

No ASD Table

Relevant External Links for CAHM Gene

GeneLoc Exon Structure for

Expression for CAHM Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CAHM Gene

mRNA differential expression in normal tissues according to GTEx for CAHM Gene

This gene is overexpressed in Nerve - Tibial (x4.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CAHM

SOURCE GeneReport for Unigene cluster for CAHM Gene:

genes like me logo Genes that share expression patterns with CAHM: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CAHM Gene

Orthologs for CAHM Gene

Evolution for CAHM Gene

Gene Tree for CAHM (if available)
Gene Tree for CAHM (if available)

No data available for Orthologs for CAHM Gene

Paralogs for CAHM Gene

No data available for Paralogs for CAHM Gene

Variants for CAHM Gene

Additional dbSNP identifiers (rs#s) for CAHM Gene

Structural Variations from Database of Genomic Variants (DGV) for CAHM Gene

Variant ID Type Subtype PubMed ID
dgv11024n54 CNV loss 21841781
dgv11025n54 CNV loss 21841781
dgv11026n54 CNV gain 21841781
esv26812 CNV loss 19812545
nsv605196 CNV gain+loss 21841781
nsv605200 CNV loss 21841781
nsv605204 CNV gain+loss 21841781
nsv605205 CNV gain+loss 21841781

Additional Variant Information for CAHM Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CAHM Gene

Disorders for CAHM Gene

MalaCards: The human disease database

(3) MalaCards diseases for CAHM Gene - From: LncRNADisease, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
colorectal cancer
  • crc
  • astrocytic tumor
colon adenocarcinoma
  • adenocarcinoma of colon
- elite association - COSMIC cancer census association via MalaCards
Search CAHM in MalaCards View complete list of genes associated with diseases

Additional Disease Information for CAHM

genes like me logo Genes that share disorders with CAHM: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CAHM Gene

Publications for CAHM Gene

  1. CAHM, a long non-coding RNA gene hypermethylated in colorectal neoplasia. (PMID: 24799664) Pedersen SK … Molloy PL (Epigenetics 2014) 2 3 54
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 54

Products for CAHM Gene

Sources for CAHM Gene