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Aliases for CAHM Gene

Subcategory (RNA class) for CAHM Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for CAHM Gene

  • Colon Adenocarcinoma Hypermethylated (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 468 2 3
  • LINC00468 3

External Ids for CAHM Gene

ORGUL Members for CAHM Gene

Previous GeneCards Identifiers for CAHM Gene

  • GC06U902263
  • GC06M163836

Summaries for CAHM Gene

GeneCards Summary for CAHM Gene

CAHM (Colon Adenocarcinoma Hypermethylated (Non-Protein Coding)) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CAHM include Colon Adenocarcinoma.

Additional gene information for CAHM Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CAHM Gene

Genomics for CAHM Gene

GeneHancer (GH) Regulatory Elements for CAHM Gene

Promoters and enhancers for CAHM Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I163412 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.8 -2.8 -2795 9.4 PKNOX1 CLOCK SMAD1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 YY1 QKI PACRG-AS3 CAHM GC06P163473
GH06I163408 Enhancer 0.9 dbSUPER 0.8 +4.3 4274 1.8 ELF3 PKNOX1 FOXA2 MLX ARID4B DMAP1 THRB ZSCAN9 RAD21 RARA PACRG-AS3 CAHM LOC105378100
GH06I163404 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +8.1 8143 3.3 HDGF ELF3 PKNOX1 MLX ARID4B DMAP1 THRB ZNF48 ZSCAN9 RAD21 QKI PACRG-AS3 CAHM LOC105378100
GH06I163411 Enhancer 0.7 Ensembl dbSUPER 0.8 +2.3 2259 0.2 GATAD2A FOXA2 SMAD4 DMAP1 PRDM10 TEAD3 CAHM LOC105378100
GH06I163396 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +17.0 16959 0.8 HLF ZSCAN4 CEBPB CEBPG EBF1 ATF4 POLR2A POU5F1 PACRG-AS3 LOC105378100 CAHM
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CAHM on UCSC Golden Path with GeneCards custom track

Genomic Locations for CAHM Gene

Genomic Locations for CAHM Gene
chr6:163,413,065-163,413,960
(GRCh38/hg38)
Size:
896 bases
Orientation:
Minus strand
chr6:163,834,097-163,834,992
(GRCh37/hg19)

Genomic View for CAHM Gene

Genes around CAHM on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CAHM Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CAHM Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CAHM Gene

Proteins for CAHM Gene

Post-translational modifications for CAHM Gene

No Post-translational modifications

No data available for DME Specific Peptides for CAHM Gene

Domains & Families for CAHM Gene

Gene Families for CAHM Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CAHM: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CAHM Gene

Function for CAHM Gene

Phenotypes From GWAS Catalog for CAHM Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CAHM Gene

Localization for CAHM Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CAHM Gene

Pathways & Interactions for CAHM Gene

No Data Available

Interacting Proteins for CAHM Gene

Gene Ontology (GO) - Biological Process for CAHM Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CAHM Gene

Drugs & Compounds for CAHM Gene

No Compound Related Data Available

Transcripts for CAHM Gene

mRNA/cDNA for CAHM Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CAHM Gene

Colon adenocarcinoma hypermethylated (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CAHM Gene

No ASD Table

Relevant External Links for CAHM Gene

GeneLoc Exon Structure for
CAHM
ECgene alternative splicing isoforms for
CAHM

Expression for CAHM Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CAHM Gene

mRNA differential expression in normal tissues according to GTEx for CAHM Gene

This gene is overexpressed in Nerve - Tibial (x4.3).

NURSA nuclear receptor signaling pathways regulating expression of CAHM Gene:

CAHM

SOURCE GeneReport for Unigene cluster for CAHM Gene:

Hs.644159
genes like me logo Genes that share expression patterns with CAHM: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CAHM Gene

Orthologs for CAHM Gene

Evolution for CAHM Gene

ENSEMBL:
Gene Tree for CAHM (if available)
TreeFam:
Gene Tree for CAHM (if available)

No data available for Orthologs for CAHM Gene

Paralogs for CAHM Gene

No data available for Paralogs for CAHM Gene

Variants for CAHM Gene

Sequence variations from dbSNP and Humsavar for CAHM Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000343956 -- 163,414,730(-) C/G upstream_transcript_variant
rs1000659882 -- 163,415,637(-) G/A upstream_transcript_variant
rs1000795211 -- 163,415,484(-) G/C upstream_transcript_variant
rs1000986965 -- 163,414,074(-) G/A upstream_transcript_variant
rs1001000204 -- 163,415,734(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CAHM Gene

Variant ID Type Subtype PubMed ID
dgv11024n54 CNV loss 21841781
dgv11025n54 CNV loss 21841781
dgv11026n54 CNV gain 21841781
esv26812 CNV loss 19812545
nsv605196 CNV gain+loss 21841781
nsv605200 CNV loss 21841781
nsv605204 CNV gain+loss 21841781
nsv605205 CNV gain+loss 21841781

Additional Variant Information for CAHM Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CAHM

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CAHM Gene

Disorders for CAHM Gene

MalaCards: The human disease database

(1) MalaCards diseases for CAHM Gene - From: GeneCards

Disorder Aliases PubMed IDs
colon adenocarcinoma
  • adenocarcinoma of colon
- elite association - COSMIC cancer census association via MalaCards
Search CAHM in MalaCards View complete list of genes associated with diseases

Additional Disease Information for CAHM

genes like me logo Genes that share disorders with CAHM: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CAHM Gene

Publications for CAHM Gene

  1. CAHM, a long non-coding RNA gene hypermethylated in colorectal neoplasia. (PMID: 24799664) Pedersen SK … Molloy PL (Epigenetics 2014) 2 3 58
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for CAHM Gene

Sources for CAHM Gene

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