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Aliases for CADM3-AS1 Gene

Subcategory (RNA class) for CADM3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CADM3-AS1 Gene

  • CADM3 Antisense RNA 1 2 3 5
  • CTA-134P22.2 3

External Ids for CADM3-AS1 Gene

Summaries for CADM3-AS1 Gene

GeneCards Summary for CADM3-AS1 Gene

CADM3-AS1 (CADM3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with CADM3-AS1 include Bladder Cancer.

Additional gene information for CADM3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CADM3-AS1 Gene

Genomics for CADM3-AS1 Gene

GeneHancer (GH) Regulatory Elements for CADM3-AS1 Gene

Promoters and enhancers for CADM3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J159004 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10 +196.9 196901 12.6 HDGF PKNOX1 ATF1 SMAD1 IRF4 YY1 TCF12 ZNF766 ZNF207 ATF7 IFI16 OR6N2 CADM3-AS1 RAD1P2 ACKR1 AIM2 PYHIN1 GC01M159011
GH01J160187 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 9.8 -982.8 -982804 6.7 HDGF ARNT ARID4B SIN3A DMAP1 ZNF2 IRF4 ZNF143 ZNF548 KLF13 CASQ1 USP21 ENSG00000228606 PPOX LOC729867 NCSTN SNHG28 RPSAP18 SLAMF8 B4GALT3
GH01J159881 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.3 -674.2 -674162 1.7 PKNOX1 SMAD1 ATF7 FOS DEK ZNF491 ZNF518A ZNF592 MAFF SMARCA4 RPSAP18 ENSG00000272668 SNHG28 ENSG00000228606 SLAMF8 PIGM DCAF8 CADM3 CADM3-AS1 COPA
GH01J159172 Enhancer 0.9 FANTOM5 Ensembl ENCODE 11.2 +34.9 34889 1 SP1 ZNF143 SIN3A CTBP2 EBF1 CADM3 ACKR1 CADM3-AS1 AIM2 ENSG00000212161 OR10J3 OR6N1 OR6K3 FCER1A OR6N2
GH01J159141 Enhancer 0.8 FANTOM5 Ensembl 11.3 +66.0 65984 0.8 MXI1 SP1 JUND ATF3 POLR3A ZBTB48 POLR2A FOS PRDM10 ZBTB17 GC01M159143 TRR-TCT4-1 OR6K3 OR6N1 FCER1A CADM3 ACKR1 CADM3-AS1 OR6N2 OR10J5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CADM3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CADM3-AS1 Gene

Genomic Locations for CADM3-AS1 Gene
chr1:159,194,325-159,207,973
(GRCh38/hg38)
Size:
13,649 bases
Orientation:
Minus strand
chr1:159,165,775-159,177,763
(GRCh37/hg19)

Genomic View for CADM3-AS1 Gene

Genes around CADM3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CADM3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CADM3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CADM3-AS1 Gene

Proteins for CADM3-AS1 Gene

Post-translational modifications for CADM3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CADM3-AS1 Gene

Domains & Families for CADM3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CADM3-AS1 Gene

Function for CADM3-AS1 Gene

Phenotypes From GWAS Catalog for CADM3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CADM3-AS1 Gene

Localization for CADM3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CADM3-AS1 Gene

Pathways & Interactions for CADM3-AS1 Gene

SuperPathways for CADM3-AS1 Gene

No Data Available

Interacting Proteins for CADM3-AS1 Gene

Gene Ontology (GO) - Biological Process for CADM3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CADM3-AS1 Gene

Drugs & Compounds for CADM3-AS1 Gene

No Compound Related Data Available

Transcripts for CADM3-AS1 Gene

mRNA/cDNA for CADM3-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CADM3-AS1 Gene

No ASD Table

Relevant External Links for CADM3-AS1 Gene

GeneLoc Exon Structure for
CADM3-AS1
ECgene alternative splicing isoforms for
CADM3-AS1

Expression for CADM3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CADM3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CADM3-AS1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x6.1) and Brain - Cerebellum (x6.0).
genes like me logo Genes that share expression patterns with CADM3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CADM3-AS1 Gene

Orthologs for CADM3-AS1 Gene

Evolution for CADM3-AS1 Gene

ENSEMBL:
Gene Tree for CADM3-AS1 (if available)
TreeFam:
Gene Tree for CADM3-AS1 (if available)

No data available for Orthologs for CADM3-AS1 Gene

Paralogs for CADM3-AS1 Gene

No data available for Paralogs for CADM3-AS1 Gene

Variants for CADM3-AS1 Gene

Sequence variations from dbSNP and Humsavar for CADM3-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000157237 -- 159,203,016(-) T/G upstream_transcript_variant
rs1000194263 -- 159,203,818(-) G/A upstream_transcript_variant
rs1000373017 -- 159,203,238(-) T/C upstream_transcript_variant
rs1000393404 -- 159,200,800(-) A/C intron_variant
rs1000488956 -- 159,204,257(-) C/T upstream_transcript_variant

Additional Variant Information for CADM3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CADM3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CADM3-AS1 Gene

Disorders for CADM3-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CADM3-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
bladder cancer
  • bladder cancer, somatic
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for CADM3-AS1

genes like me logo Genes that share disorders with CADM3-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CADM3-AS1 Gene

Publications for CADM3-AS1 Gene

  1. Bivariate genome-wide association study suggests that the DARC gene influences lean body mass and age at menarche. (PMID: 22744181) Hai R … Deng H (Science China. Life sciences 2012) 3 58
  2. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey SD … DREAM investigators (Diabetes care 2010) 3 58
  3. Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip. (PMID: 19913121) Talmud PJ … BRIGHT Consortium (American journal of human genetics 2009) 3 58

Products for CADM3-AS1 Gene

Sources for CADM3-AS1 Gene

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