CAD Gene (Protein Coding)

Carbamoyl-Phosphate Synthetase 2, Aspartate Transcarbamylase, And Dihydroorotase

GC02P027217
GIFtS:
51
The de novo synthesis of pyrimidine nucleotides is required for mammalian cells to proliferate. This gene encodes a trifunctional protein which is associated with the enzymatic activities of the first 3 enzymes in the 6-step pathway of pyrimidine biosynthesis: carbamoylphosphate synthetase (CPS II), aspartate transcarbamoylase, and dihydroorotase. This protein is regulated by t... See more...

Aliases for CAD Gene

Aliases for CAD Gene

  • Carbamoyl-Phosphate Synthetase 2, Aspartate Transcarbamylase, And Dihydroorotase 2 3 5
  • CAD Protein 3 4
  • GATD4 2 3
  • Multifunctional Protein CAD 3
  • CAD Trifunctional Protein 3
  • EC 6.3.5.5 50
  • EC 2.1.3.2 50
  • EC 3.5.2.3 50
  • EC 6.3.5 50
  • EIEE50 3
  • CDG1Z 3
  • DEE50 3
  • CAD 5

External Ids for CAD Gene

Previous GeneCards Identifiers for CAD Gene

  • GC02P027361
  • GC02P027532
  • GC02P027414
  • GC02P027351
  • GC02P027440
  • GC02P027181

Summaries for CAD Gene

Entrez Gene Summary for CAD Gene

  • The de novo synthesis of pyrimidine nucleotides is required for mammalian cells to proliferate. This gene encodes a trifunctional protein which is associated with the enzymatic activities of the first 3 enzymes in the 6-step pathway of pyrimidine biosynthesis: carbamoylphosphate synthetase (CPS II), aspartate transcarbamoylase, and dihydroorotase. This protein is regulated by the mitogen-activated protein kinase (MAPK) cascade, which indicates a direct link between activation of the MAPK cascade and de novo biosynthesis of pyrimidine nucleotides. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Apr 2015]

GeneCards Summary for CAD Gene

CAD (Carbamoyl-Phosphate Synthetase 2, Aspartate Transcarbamylase, And Dihydroorotase) is a Protein Coding gene. Diseases associated with CAD include Developmental And Epileptic Encephalopathy 50. Among its related pathways are Transcription Ligand-dependent activation of the ESR1/SP pathway and Validated targets of C-MYC transcriptional activation. Gene Ontology (GO) annotations related to this gene include identical protein binding and enzyme binding. An important paralog of this gene is CPS1.

UniProtKB/Swiss-Prot Summary for CAD Gene

  • This protein is a 'fusion' protein encoding four enzymatic activities of the pyrimidine pathway (GATase, CPSase, ATCase and DHOase).

Additional gene information for CAD Gene

No data available for CIViC Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CAD Gene

Genomics for CAD Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for CAD Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CAD on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for CAD

Top Transcription factor binding sites by QIAGEN in the CAD gene promoter:
  • AP-1
  • ATF-2
  • c-Jun
  • CUTL1
  • MyoD
  • PPAR-gamma1
  • PPAR-gamma2

Genomic Locations for CAD Gene

Latest Assembly
chr2:27,217,369-27,243,943
(GRCh38/hg38)
Size:
26,575 bases
Orientation:
Plus strand

Previous Assembly
chr2:27,440,237-27,466,811
(GRCh37/hg19 by Entrez Gene)
Size:
26,575 bases
Orientation:
Plus strand

chr2:27,440,258-27,466,811
(GRCh37/hg19 by Ensembl)
Size:
26,554 bases
Orientation:
Plus strand

Genomic View for CAD Gene

Genes around CAD on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CAD Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CAD Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for CAD Gene

Proteins for CAD Gene

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  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

  • Protein details for CAD Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P27708-PYR1_HUMAN
    Recommended name:
    CAD protein
    Protein Accession:
    P27708
    Secondary Accessions:
    • D6W552
    • Q6P0Q0
    • Q96CK3

    Protein attributes for CAD Gene

    Size:
    2225 amino acids
    Molecular mass:
    242984 Da
    Cofactor:
    Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
    Cofactor:
    Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
    Cofactor:
    Name=Mn(2+); Xref=ChEBI:CHEBI:29035;
    Quaternary structure:
    • Homohexamer (PubMed:24332717). Interacts with CIPC (PubMed:26657846).
    Miscellaneous:
    • GATase (glutamine amidotransferase) and CPSase (carbamoyl phosphate synthase) form together the glutamine-dependent CPSase (GD-CPSase) (EC 6.3.5.5).

    Three dimensional structures from OCA and Proteopedia for CAD Gene

neXtProt entry for CAD Gene

Protein Expression for CAD Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Selected DME Specific Peptides for CAD Gene

P27708:
  • SNGPGDP
  • NYNPETVSTD
  • TRIQKERF
  • AAYFRQA
  • DVHVHLR
  • HVHLREPG
  • FGICLGHQ
  • GICLGHQL
  • GRTVHSL
  • HPTQALLD
  • ASDHAPH
  • DPRAAYF
  • GHQLLAL
  • VINAGDG
  • PLIGNYG

Post-translational modifications for CAD Gene

  • Activated by MAP kinase (Erk1/2) phosphorylation just prior to the S phase of the cell cycle, when the demand for pyrimidine nucleotides is greatest, and down-regulated as the cells emerge from S phase by protein kinase A (PKA) phosphorylation. Phosphorylation at Ser-1859 by RPS6KB1 downstream of MTOR promotes oligomerization and stimulates dihydroorotase activity. Phosphorylation at Ser-1406 reduces sensitivity to feedback inhibition by UTP.
  • Ubiquitination at Lys165, Lys186, Lys490, Lys696, Lys739, Lys747, Lys778, Lys1119, Lys1313, and Lys1411
  • Modification sites at PhosphoSitePlus

Other Protein References for CAD Gene

ENSEMBL proteins:
REFSEQ proteins:

Domains & Families for CAD Gene

Gene Families for CAD Gene

HGNC:
Human Protein Atlas (HPA):
  • Cancer-related genes
  • Disease related genes
  • Enzymes
  • Plasma proteins
  • Potential drug targets
  • Predicted intracellular proteins

Protein Domains for CAD Gene

InterPro:
Blocks:
  • Glutamine amidotransferase class-I
  • MGS-like
  • Dihydroorotase
  • Carbamoyl-phosphate synthase protein GATase domain signature
  • Aspartate carbamoyltransferase signature
  • Carbamoyl-phosphate synthase, small chain
  • Carbamoyl-phosphate synthetase large chain, oligomerisation

Suggested Antigen Peptide Sequences for CAD Gene

GenScript: Design optimal peptide antigens:
  • CAD protein (PYR1_HUMAN)
  • CAD protein (Q96CK3_HUMAN)

Graphical View of Domain Structure for InterPro Entry

P27708

UniProtKB/Swiss-Prot:

PYR1_HUMAN :
  • In the central section; belongs to the metallo-dependent hydrolases superfamily. DHOase family. CAD subfamily.
Family:
  • In the central section; belongs to the metallo-dependent hydrolases superfamily. DHOase family. CAD subfamily.
genes like me logo Genes that share domains with CAD: view

Function for CAD Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Molecular function for CAD Gene

UniProtKB/Swiss-Prot Function:
This protein is a 'fusion' protein encoding four enzymatic activities of the pyrimidine pathway (GATase, CPSase, ATCase and DHOase).
UniProtKB/Swiss-Prot CatalyticActivity:
Reaction=2 ATP + H2O + hydrogencarbonate + L-glutamine = 2 ADP + carbamoyl phosphate + 2 H(+) + L-glutamate + phosphate; Xref=Rhea:RHEA:18633, ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:17544, ChEBI:CHEBI:29985, ChEBI:CHEBI:30616, ChEBI:CHEBI:43474, ChEBI:CHEBI:58228, ChEBI:CHEBI:58359, ChEBI:CHEBI:456216; EC=6.3.5.5; Evidence={ECO:0000269|PubMed:24332717};.
UniProtKB/Swiss-Prot CatalyticActivity:
Reaction=carbamoyl phosphate + L-aspartate = H(+) + N-carbamoyl-L-aspartate + phosphate; Xref=Rhea:RHEA:20013, ChEBI:CHEBI:15378, ChEBI:CHEBI:29991, ChEBI:CHEBI:32814, ChEBI:CHEBI:43474, ChEBI:CHEBI:58228; EC=2.1.3.2; Evidence={ECO:0000269|PubMed:24332717};.
UniProtKB/Swiss-Prot CatalyticActivity:
Reaction=(S)-dihydroorotate + H2O = H(+) + N-carbamoyl-L-aspartate; Xref=Rhea:RHEA:24296, ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30864, ChEBI:CHEBI:32814; EC=3.5.2.3; Evidence={ECO:0000269|PubMed:24332717};.
UniProtKB/Swiss-Prot Induction:
Transcriptionally repressed following hypoxia by HIF1A.
UniProtKB/Swiss-Prot BiophysicochemicalProperties:
Kinetic parameters: KM=28 uM for dihydroorotate {ECO:0000269|PubMed:24332717}; KM=241 uM for N-carbamoyl-L-aspartate {ECO:0000269|PubMed:24332717};
UniProtKB/Swiss-Prot EnzymeRegulation:
Allosterically regulated and controlled by phosphorylation. 5-phosphoribose 1-diphosphate (PRPP) is an activator while UMP and UTP are inhibitors of the CPSase reaction.
GENATLAS Biochemistry:
pyrimidine de novo biosynthesis,multifunctional polypeptide,200kDa (see CPS2,ASTC,DHO),putative up-regulated c-Myc target gene,DNA metabolism

Enzyme Numbers (IUBMB) for CAD Gene

Phenotypes From GWAS Catalog for CAD Gene

Gene Ontology (GO) - Molecular Function for CAD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding IEA --
GO:0003824 catalytic activity IEA --
GO:0004070 aspartate carbamoyltransferase activity IEA,ISS --
GO:0004088 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity IEA,ISS --
GO:0004151 dihydroorotase activity IEA,ISS --
genes like me logo Genes that share ontologies with CAD: view
genes like me logo Genes that share phenotypes with CAD: view

Human Phenotype Ontology for CAD Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for research

miRNA for CAD Gene

miRTarBase miRNAs that target CAD

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for CAD

No data available for Animal Models , Transcription Factor Targets and HOMER Transcription for CAD Gene

Localization for CAD Gene

Subcellular locations from UniProtKB/Swiss-Prot for CAD Gene

Cytoplasm. Nucleus. Note=Cytosolic and unphosphorylated in resting cells, translocates to the nucleus in response to EGF stimulation, nuclear import promotes optimal cell growth.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CAD gene
Compartment Confidence
nucleus 5
cytosol 5
extracellular 4
plasma membrane 3
mitochondrion 2
cytoskeleton 1
peroxisome 1
endoplasmic reticulum 1
endosome 1
lysosome 1
golgi apparatus 0

Subcellular locations from the

Human Protein Atlas (HPA)
  • Nucleoplasm (3)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for CAD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA,IDA 15890648
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm IBA 21873635
GO:0005829 cytosol IEA,TAS --
GO:0016020 membrane HDA 19946888
genes like me logo Genes that share ontologies with CAD: view

Pathways & Interactions for CAD Gene

genes like me logo Genes that share pathways with CAD: view

Pathways by source for CAD Gene

1 Sino Biological pathway for CAD Gene
1 GeneGo (Thomson Reuters) pathway for CAD Gene
  • Transcription Ligand-dependent activation of the ESR1/SP pathway
1 R&D Systems pathway for CAD Gene
4 Cell Signaling Technology pathways for CAD Gene

UniProtKB/Swiss-Prot P27708-PYR1_HUMAN

  • Pathway: Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 1/3.
  • Pathway: Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 2/3.
  • Pathway: Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 3/3.

SIGNOR curated interactions for CAD Gene

Activates:
Is activated by:
Is inactivated by:
Other effect:

Gene Ontology (GO) - Biological Process for CAD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001889 liver development IEA --
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEA,ISS --
GO:0006221 pyrimidine nucleotide biosynthetic process IEA --
GO:0006228 UTP biosynthetic process IBA 21873635
GO:0006520 cellular amino acid metabolic process IEA --
genes like me logo Genes that share ontologies with CAD: view

Drugs & Compounds for CAD Gene

Products:

  1. Drug products for research

(19) Drugs for CAD Gene - From: DrugBank, HMDB, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Aspartic acid Approved Nutra Enzyme, substrate 195
L-Glutamine Approved, Investigational Nutra Enzyme, substrate 0
Ammonia Approved Pharma 0
Famotidine Approved Pharma Histamine H2-receptor antagonist 99
Water Approved Pharma 0

(17) Additional Compounds for CAD Gene - From: HMDB and Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Carbamoyl phosphate
  • Aminocarbonyl dihydrogen phosphate
  • Carbamic phosphoric monoanhydride
  • Carbamyl phosphate
  • Monocarbamoyl phosphate
  • Phosphoric acid mono(formamide)ester
 590-55-6
4,5-Dihydroorotic acid
  • 5,6-Dihydro-orotic acid
  • DL-Dihydroortotic acid
  • Hydroorotic acid
  • 5,6-Dihydro-orotate
  • DL-Dihydroortotate
 155-54-4
ADP
  • 5'-Adenylphosphoric acid
  • Adenosine 5'-diphosphate
  • ADENOSINE-5'-diphosphATE
  • H3ADP
  • 5'-Adenylphosphate
 58-64-0
Hydrogen carbonate
  • [CO(OH)2]
  • Dihydrogen carbonate
  • H2CO3
  • Koehlensaeure
  • Dihydrogen carbonic acid
 71-52-3
L-Dihydroorotic acid
  • (S)-4,5-Dihydroorotic acid
  • Dihydro-L-orotic acid
  • (S)-4,5-Dihydroorotate
  • L-Dihydroorotate
  • Dihydro-L-orotate
 5988-19-2
genes like me logo Genes that share compounds with CAD: view

Transcripts for CAD Gene

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  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
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mRNA/cDNA for CAD Gene

2 REFSEQ mRNAs :
10 NCBI additional mRNA sequence :
11 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for CAD

Alternative Splicing Database (ASD) splice patterns (SP) for CAD Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14 ^ 15 ^ 16a · 16b ^ 17 ^ 18 ^ 19a · 19b ^ 20 ^ 21 ^
SP1: -
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:

ExUns: 22 ^ 23 ^ 24 ^ 25 ^ 26 ^ 27a · 27b ^ 28 ^ 29 ^ 30a · 30b ^ 31 ^ 32 ^ 33a · 33b ^ 34 ^ 35a · 35b · 35c ^ 36 ^ 37 ^ 38 ^ 39a · 39b ^ 40a · 40b ^
SP1: - - - -
SP2: - - - -
SP3: -
SP4: - - - - - - - - - - - -
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:

ExUns: 41a · 41b · 41c · 41d · 41e · 41f ^ 42 ^ 43a · 43b ^ 44 ^ 45 ^ 46a · 46b
SP1:
SP2:
SP3:
SP4:
SP5: - - - - -
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:

Relevant External Links for CAD Gene

GeneLoc Exon Structure for
CAD

Expression for CAD Gene

Products:

  1. Primer products for research
  2. Gene Expression Assays for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CAD Gene

mRNA expression in normal human tissues for CAD Gene
mRNA expression by BioGPS for CAD GenemRNA expression by GTEx for CAD Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for CAD Gene

This gene is overexpressed in Peripheral blood mononuclear cells (13.4), Breast (7.4), and Lymph node (6.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for CAD Gene



Protein tissue co-expression partners for CAD Gene

- Elite partner

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CAD

SOURCE GeneReport for Unigene cluster for CAD Gene:

Hs.377010

Evidence on tissue expression from TISSUES for CAD Gene

  • Liver(4.6)
  • Eye(4.5)
  • Heart(2.6)
  • Nervous system(2.3)
  • Blood(2.1)
  • Skin(2)

Phenotype-based relationships between genes and organs from Gene ORGANizer for CAD Gene

Germ Layers:
  • ectoderm
  • mesoderm
Systems:
  • cardiovascular
  • nervous
  • skeletal muscle
  • skeleton
  • urinary
Regions:
Head and neck:
  • brain
  • head
Abdomen:
  • kidney
Limb:
  • lower limb
General:
  • blood
  • coagulation system
  • peripheral nerve
  • peripheral nervous system
  • red blood cell
genes like me logo Genes that share expression patterns with CAD: view

Primer products for research

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CAD Gene

Orthologs for CAD Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for CAD Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia CAD 29 30
  • 99.76 (n)
 OneToOne
Oppossum
(Monodelphis domestica)
 Mammalia CAD 30
  • 93 (a)
 OneToOne
Dog
(Canis familiaris)
 Mammalia CAD 29 30
  • 90.79 (n)
 OneToOne
Cow
(Bos Taurus)
 Mammalia CAD 29 30
  • 90.32 (n)
 OneToOne
Mouse
(Mus musculus)
 Mammalia Cad 29 16 30
  • 88.7 (n)
 OneToOne
Rat
(Rattus norvegicus)
 Mammalia Cad 29
  • 88.28 (n)
Platypus
(Ornithorhynchus anatinus)
 Mammalia CAD 30
  • 77 (a)
 OneToOne
Chicken
(Gallus gallus)
 Aves CAD 29 30
  • 75.3 (n)
 OneToOne
Lizard
(Anolis carolinensis)
 Reptilia CAD 30
  • 80 (a)
 OneToOne
Tropical Clawed Frog
(Silurana tropicalis)
 Amphibia cad 29
  • 74.08 (n)
Str.435 29
African clawed frog
(Xenopus laevis)
 Amphibia Xl.24787 29
Zebrafish
(Danio rerio)
 Actinopterygii cad 29 30
  • 70.6 (n)
 OneToOne
Fruit Fly
(Drosophila melanogaster)
 Insecta r 29 30 31
  • 63.52 (n)
 OneToOne
African malaria mosquito
(Anopheles gambiae)
 Insecta AgaP_AGAP000300 29
  • 43.16 (n)
Worm
(Caenorhabditis elegans)
 Secernentea pyr-1 29 30
  • 56.97 (n)
 OneToOne
A. gosspyii yeast
(Eremothecium gossypii)
 Saccharomycetes AGOS_ACR263C 29
  • 54.73 (n)
K. Lactis Yeast
(Kluyveromyces lactis)
 Saccharomycetes KLLA0E15357g 29
  • 52.83 (n)
Baker's yeast
(Saccharomyces cerevisiae)
 Saccharomycetes URA2 29 30 32
  • 52.72 (n)
 OneToMany
Bread mold
(Neurospora crassa)
 Ascomycetes NCU08287 29
  • 58.79 (n)
Fission Yeast
(Schizosaccharomyces pombe)
 Schizosaccharomycetes ura1 29
  • 52.79 (n)
Sea Squirt
(Ciona savignyi)
 Ascidiacea CSA.4454 30
  • 38 (a)
 OneToOne
Sea Vase
(Ciona intestinalis)
 Ascidiacea Cin.9135 29
Species where no ortholog for CAD was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Wheat (Triticum aestivum)

Evolution for CAD Gene

ENSEMBL:
Gene Tree for CAD (if available)
TreeFam:
Gene Tree for CAD (if available)
Aminode:
Evolutionary constrained regions (ECRs) for CAD: view image
Alliance of Genome Resources:
Additional Orthologs for CAD

Paralogs for CAD Gene

Paralogs for CAD Gene

(1) SIMAP similar genes for CAD Gene using alignment to 8 proteins:

  • PYR1_HUMAN
  • F8VPD4_HUMAN
  • G1UI39_HUMAN
  • H7BZB3_HUMAN
  • H7C2E4_HUMAN
  • H7C3Z5_HUMAN
  • Q53SY7_HUMAN
  • Q53SZ4_HUMAN
genes like me logo Genes that share paralogs with CAD: view

Variants for CAD Gene

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  1. SNP Genotyping and Copy Number Assays for research

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for CAD Gene

SNP ID Clinical significance and condition Chr 02 pos Variation AA Info Type
1013404 Likely Benign: not provided 27,239,154(+) G/A
NM_004341.5(CAD):c.5175G>A (p.Leu1725=) 		SYNONYMOUS
1021129 Uncertain Significance: not provided 27,222,940(+) C/T
NM_004341.5(CAD):c.712C>T (p.Arg238Cys) 		MISSENSE
1028219 Uncertain Significance: Epileptic encephalopathy, early infantile, 50 27,224,842(+) A/G
NM_004341.5(CAD):c.1352A>G (p.Tyr451Cys) 		MISSENSE
1028220 Uncertain Significance: Epileptic encephalopathy, early infantile, 50 27,218,002(+) T/C
NM_004341.5(CAD):c.208T>C (p.Phe70Leu) 		MISSENSE
1028221 Uncertain Significance: Epileptic encephalopathy, early infantile, 50 27,221,216(+) A/G
NM_004341.5(CAD):c.223-2A>G 		SPLICE_ACCEPTOR

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for CAD Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for CAD Gene

Variant ID Type Subtype PubMed ID
esv275571 CNV loss 21479260
nsv833603 CNV loss 17160897

Variation tolerance for CAD Gene

Residual Variation Intolerance Score: 0.0663% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.14; 51.51% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for CAD Gene

Human Gene Mutation Database (HGMD)
CAD
SNPedia medical, phenotypic, and genealogical associations of SNPs for
CAD
Leiden Open Variation Database (LOVD)
CAD

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CAD Gene

Disorders for CAD Gene

MalaCards: The human disease database

(1) MalaCards diseases for CAD Gene - From: OMI, CVR, GTR, ORP, SWI, and COP

Disorder Aliases PubMed IDs
developmental and epileptic encephalopathy 50
  • dee50
- elite association - COSMIC cancer census association via MalaCards
Search CAD in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

PYR1_HUMAN
  • Epileptic encephalopathy, early infantile, 50 (EIEE50) [MIM:616457]: A form of epileptic encephalopathy, a heterogeneous group of severe childhood onset epilepsies characterized by refractory seizures, neurodevelopmental impairment, and poor prognosis. Development is normal prior to seizure onset, after which cognitive and motor delays become apparent. EIEE50 is an autosomal recessive, progressive disease with onset in infancy and favorable response to treatment with oral uridine. {ECO:0000269 PubMed:25678555, ECO:0000269 PubMed:28087732}. Note=The disease is caused by variants affecting the gene represented in this entry.

Additional Disease Information for CAD

Human Genome Epidemiology Navigator
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No data available for Genatlas for CAD Gene

Publications for CAD Gene

  1. Molecular cloning of a human cDNA encoding a trifunctional enzyme of carbamoyl-phosphate synthetase-aspartate transcarbamoylase-dihydroorotase in de Novo pyrimidine synthesis. (PMID: 8619816) Iwahana H … Itakura M (Biochemical and biophysical research communications 1996) 2 3 4 22
  2. Biallelic mutations in CAD, impair de novo pyrimidine biosynthesis and decrease glycosylation precursors. (PMID: 25678555) Ng BG … Freeze HH (Human molecular genetics 2015) 3 4 72
  3. Transcriptional repression of human cad gene by hypoxia inducible factor-1alpha. (PMID: 16155188) Chen KF … Tsai SJ (Nucleic acids research 2005) 3 4 22
  4. Nuclear localization and mitogen-activated protein kinase phosphorylation of the multifunctional protein CAD. (PMID: 15890648) Sigoillot FD … Guy HI (The Journal of biological chemistry 2005) 3 4 22
  5. Organization and nucleotide sequence of the 3' end of the human CAD gene. (PMID: 1979741) Davidson JN … Chen KC (DNA and cell biology 1990) 3 4 22

ExternalLinks

View latest publications for CAD gene in Mastermind

Products for CAD Gene

  • Addgene plasmids for CAD