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Aliases for CACYBPP3 Gene

Subcategory (RNA class) for CACYBPP3 Gene

lncRNA

Aliases for CACYBPP3 Gene

  • Calcyclin Binding Protein Pseudogene 3 2 3 5

External Ids for CACYBPP3 Gene

ORGUL Members for CACYBPP3 Gene

Previous GeneCards Identifiers for CACYBPP3 Gene

  • GC06M158936

Summaries for CACYBPP3 Gene

GeneCards Summary for CACYBPP3 Gene

CACYBPP3 (Calcyclin Binding Protein Pseudogene 3) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for CACYBPP3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CACYBPP3 Gene

Genomics for CACYBPP3 Gene

GeneHancer (GH) Regulatory Elements for CACYBPP3 Gene

Promoters and enhancers for CACYBPP3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I158517 Enhancer 1.1 Ensembl ENCODE 0.8 -2.3 -2255 1.6 FOXA2 ARID4B YBX1 ZNF2 IRF4 ZNF121 GLIS2 ZNF143 FOS RUNX3 DYNLT1 CACYBPP3 TMEM181
GH06I158474 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +40.7 40683 2.6 HDGF PKNOX1 IRF4 GLIS2 ZNF207 ATF7 FOS RUNX3 SP3 JUNB ENSG00000238019 DYNLT1 SYTL3 SERAC1 RN7SL173P CACYBPP3 TULP4
GH06I158481 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 +34.2 34231 1.3 ZNF189 JUN GFI1B SP1 JUND ZNF600 FOS FOSL2 ENSG00000238019 CACYBPP3 RN7SL173P TULP4
GH06I158487 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.3 +27.9 27903 1.8 ZNF121 MXI1 JUND POLR2A JUN FOS ENSG00000238019 CACYBPP3 RN7SL173P TULP4
GH06I158470 Enhancer 0.7 dbSUPER 0.3 +44.3 44331 2.7 ZNF687 CBFA2T3 DPF2 BATF ATF2 ZNF592 TCF12 PRDM6 ZNF316 IKZF1 ENSG00000238019 SYTL3 DYNLT1 RN7SL173P CACYBPP3 TULP4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CACYBPP3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CACYBPP3 Gene

Genomic Locations for CACYBPP3 Gene
chr6:158,515,605-158,516,229
(GRCh38/hg38)
Size:
625 bases
Orientation:
Minus strand
chr6:158,936,637-158,937,261
(GRCh37/hg19)

Genomic View for CACYBPP3 Gene

Genes around CACYBPP3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CACYBPP3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACYBPP3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACYBPP3 Gene

Proteins for CACYBPP3 Gene

Post-translational modifications for CACYBPP3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACYBPP3 Gene

Domains & Families for CACYBPP3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CACYBPP3 Gene

Function for CACYBPP3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACYBPP3 Gene

Localization for CACYBPP3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CACYBPP3 Gene

Pathways & Interactions for CACYBPP3 Gene

SuperPathways for CACYBPP3 Gene

No Data Available

Interacting Proteins for CACYBPP3 Gene

Gene Ontology (GO) - Biological Process for CACYBPP3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CACYBPP3 Gene

Drugs & Compounds for CACYBPP3 Gene

No Compound Related Data Available

Transcripts for CACYBPP3 Gene

mRNA/cDNA for CACYBPP3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CACYBPP3 Gene

No ASD Table

Relevant External Links for CACYBPP3 Gene

GeneLoc Exon Structure for
CACYBPP3
ECgene alternative splicing isoforms for
CACYBPP3

Expression for CACYBPP3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CACYBPP3 Gene

mRNA differential expression in normal tissues according to GTEx for CACYBPP3 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x12.9), Brain - Putamen (basal ganglia) (x10.2), and Brain - Caudate (basal ganglia) (x6.9).

NURSA nuclear receptor signaling pathways regulating expression of CACYBPP3 Gene:

CACYBPP3
genes like me logo Genes that share expression patterns with CACYBPP3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACYBPP3 Gene

Orthologs for CACYBPP3 Gene

Evolution for CACYBPP3 Gene

ENSEMBL:
Gene Tree for CACYBPP3 (if available)
TreeFam:
Gene Tree for CACYBPP3 (if available)

No data available for Orthologs for CACYBPP3 Gene

Paralogs for CACYBPP3 Gene

No data available for Paralogs for CACYBPP3 Gene

Variants for CACYBPP3 Gene

Additional Variant Information for CACYBPP3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACYBPP3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CACYBPP3 Gene

Disorders for CACYBPP3 Gene

No disorders were found for CACYBPP3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CACYBPP3 Gene

Publications for CACYBPP3 Gene

No publications were found for CACYBPP3 Gene.

Products for CACYBPP3 Gene

Sources for CACYBPP3 Gene

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