Aliases for CACTIN-AS1 Gene

Subcategory (RNA class) for CACTIN-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for CACTIN-AS1 Gene

  • CACTIN Antisense RNA 1 2 3 5
  • C19orf29 Antisense RNA 1 (Non-Protein Coding) 2 3
  • C19orf29-AS1 3 4
  • C19orf29OS 3 4
  • CACTIN-AS1 2 5
  • Putative Uncharacterized Protein Encoded By CACTIN-AS1 4
  • Chromosome 19 Open Reading Frame 29 Opposite Strand 2
  • C19orf29 Antisense RNA 1 2
  • Cactin Antisense RNA 1 4
  • NONHSAG024488.2 91
  • HSALNG0123289 164
  • Lnc-GIPC3-4 165
  • Lnc-GIPC3-3 165

External Ids for CACTIN-AS1 Gene

Previous HGNC Symbols for CACTIN-AS1 Gene

  • C19orf29OS
  • C19orf29-AS1

Summaries for CACTIN-AS1 Gene

GeneCards Summary for CACTIN-AS1 Gene

CACTIN-AS1 (CACTIN Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CACTIN-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CACTIN-AS1 Gene

Genomics for CACTIN-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CACTIN-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CACTIN-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CACTIN-AS1 Gene

Genomic Locations for CACTIN-AS1 Gene
chr19:3,606,494-3,619,191
(GRCh38/hg38)
Size:
12,698 bases
Orientation:
Plus strand
chr19:3,607,245-3,613,928
(GRCh37/hg19)
Size:
6,684 bases
Orientation:
Plus strand

Genomic View for CACTIN-AS1 Gene

Genes around CACTIN-AS1 on UCSC Golden Path with GeneCards custom track
CACTIN-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
CACTIN-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACTIN-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACTIN-AS1 Gene

Proteins for CACTIN-AS1 Gene

  • Protein details for CACTIN-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N1I8-CAAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by CACTIN-AS1
    Protein Accession:
    Q8N1I8

    Protein attributes for CACTIN-AS1 Gene

    Size:
    211 amino acids
    Molecular mass:
    22698 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CACTIN-AS1 Gene

Post-translational modifications for CACTIN-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACTIN-AS1 Gene

Domains & Families for CACTIN-AS1 Gene

Gene Families for CACTIN-AS1 Gene

Protein Domains for CACTIN-AS1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for CACTIN-AS1 Gene

GenScript: Design optimal peptide antigens:
  • C19orf29 opposite strand protein (CS29O_HUMAN)
genes like me logo Genes that share domains with CACTIN-AS1: view

No data available for Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CACTIN-AS1 Gene

Function for CACTIN-AS1 Gene

Phenotypes From GWAS Catalog for CACTIN-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACTIN-AS1 Gene

Localization for CACTIN-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CACTIN-AS1 Gene

Pathways & Interactions for CACTIN-AS1 Gene

PathCards logo

SuperPathways for CACTIN-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CACTIN-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CACTIN-AS1 Gene

Drugs & Compounds for CACTIN-AS1 Gene

No Compound Related Data Available

Transcripts for CACTIN-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CACTIN-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000037DED3_9606 lncRNA 1913 4

HGNC: 31391,

RefSeq: NR_038865,

Ensembl: ENST00000592274 (view in UCSC) ,

NONCODE: NONHSAT060536.2,

URS0000D58EBF_9606 lncRNA 279 2

LncBook: HSALNT0254619,

LNCipedia: lnc-GIPC3-4:1,

URS0000D5E338_9606 lncRNA 2475 1

LNCipedia: lnc-GIPC3-3:2,

URS00008BE755_9606 lncRNA 2283 1

NONCODE: NONHSAT060540.2,

URS0000D5CD97_9606 lncRNA 1799 1

LNCipedia: lnc-GIPC3-3:1,

CACTIN-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CACTIN-AS1 Gene

1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for CACTIN-AS1 Gene

No ASD Table

Relevant External Links for CACTIN-AS1 Gene

GeneLoc Exon Structure for
CACTIN-AS1

Expression for CACTIN-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CACTIN-AS1 Gene

Protein differential expression in normal tissues from HIPED for CACTIN-AS1 Gene

This gene is overexpressed in Plasma (50.0) and Urine (19.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CACTIN-AS1 Gene



Protein tissue co-expression partners for CACTIN-AS1 Gene

- Elite partner

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CACTIN-AS1

SOURCE GeneReport for Unigene cluster for CACTIN-AS1 Gene:

Hs.719726
genes like me logo Genes that share expression patterns with CACTIN-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACTIN-AS1 Gene

Orthologs for CACTIN-AS1 Gene

Evolution for CACTIN-AS1 Gene

ENSEMBL:
Gene Tree for CACTIN-AS1 (if available)
TreeFam:
Gene Tree for CACTIN-AS1 (if available)

No data available for Orthologs for CACTIN-AS1 Gene

Paralogs for CACTIN-AS1 Gene

No data available for Paralogs for CACTIN-AS1 Gene

Variants for CACTIN-AS1 Gene

Additional dbSNP identifiers (rs#s) for CACTIN-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for CACTIN-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv470114 CNV loss 18288195
nsv833713 CNV loss 17160897
nsv953948 CNV deletion 24416366

Additional Variant Information for CACTIN-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACTIN-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CACTIN-AS1 Gene

Disorders for CACTIN-AS1 Gene

Additional Disease Information for CACTIN-AS1

No disorders were found for CACTIN-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CACTIN-AS1 Gene

Publications for CACTIN-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3

Products for CACTIN-AS1 Gene

Sources for CACTIN-AS1 Gene