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Aliases for CACNA2D3-AS1 Gene

Subcategory (RNA class) for CACNA2D3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CACNA2D3-AS1 Gene

  • CACNA2D3 Antisense RNA 1 2 3 5
  • CACNA2D3 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for CACNA2D3-AS1 Gene

Previous GeneCards Identifiers for CACNA2D3-AS1 Gene

  • GC00U933975
  • GC03M054910

Summaries for CACNA2D3-AS1 Gene

GeneCards Summary for CACNA2D3-AS1 Gene

CACNA2D3-AS1 (CACNA2D3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CACNA2D3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CACNA2D3-AS1 Gene

Genomics for CACNA2D3-AS1 Gene

GeneHancer (GH) Regulatory Elements for CACNA2D3-AS1 Gene

Promoters and enhancers for CACNA2D3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I054900 Enhancer 0.4 Ensembl ENCODE 550.8 -0.4 -425 2.5 CACNA2D3-AS1 LRTM1 CACNA2D3
GH03I054950 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 11.4 -52.5 -52535 6.5 CTCF ESRRA JUN CEBPB REST EP300 ZIC2 RAD21 JUND POLR2A CACNA2D3-AS1 LRTM1 CACNA2D3
GH03I054869 Enhancer 0.9 Ensembl ENCODE dbSUPER 11.4 +30.7 30681 1.9 CTCF JUND POLR2A SMC3 REST RAD21 CACNA2D3-AS1 GC03M054844 GC03M054892 CACNA2D3
GH03I054874 Enhancer 0.6 ENCODE dbSUPER 12.3 +25.1 25052 3.2 POLR2A CREB1 CACNA2D3-AS1 LRTM1 GC03M054892 GC03M054844 CACNA2D3
GH03I054926 Enhancer 0.6 ENCODE 12 -25.7 -25722 0.6 PKNOX1 ATF1 ARNT E2F5 DPF2 ZNF395 ZNF83 TCF12 FOSL1 CTBP1 CACNA2D3-AS1 LRTM1 CACNA2D3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CACNA2D3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CACNA2D3-AS1 Gene

Genomic Locations for CACNA2D3-AS1 Gene
chr3:54,874,605-54,901,255
(GRCh38/hg38)
Size:
26,651 bases
Orientation:
Minus strand
chr3:54,908,632-54,935,282
(GRCh37/hg19)

Genomic View for CACNA2D3-AS1 Gene

Genes around CACNA2D3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CACNA2D3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACNA2D3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACNA2D3-AS1 Gene

Proteins for CACNA2D3-AS1 Gene

Post-translational modifications for CACNA2D3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACNA2D3-AS1 Gene

Domains & Families for CACNA2D3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CACNA2D3-AS1 Gene

Function for CACNA2D3-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACNA2D3-AS1 Gene

Localization for CACNA2D3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CACNA2D3-AS1 Gene

Pathways & Interactions for CACNA2D3-AS1 Gene

SuperPathways for CACNA2D3-AS1 Gene

No Data Available

Interacting Proteins for CACNA2D3-AS1 Gene

Gene Ontology (GO) - Biological Process for CACNA2D3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CACNA2D3-AS1 Gene

Drugs & Compounds for CACNA2D3-AS1 Gene

No Compound Related Data Available

Transcripts for CACNA2D3-AS1 Gene

mRNA/cDNA for CACNA2D3-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CACNA2D3-AS1 Gene

CACNA2D3 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CACNA2D3-AS1 Gene

No ASD Table

Relevant External Links for CACNA2D3-AS1 Gene

GeneLoc Exon Structure for
CACNA2D3-AS1
ECgene alternative splicing isoforms for
CACNA2D3-AS1

Expression for CACNA2D3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CACNA2D3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CACNA2D3-AS1 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x5.2), Brain - Frontal Cortex (BA9) (x5.0), Brain - Putamen (basal ganglia) (x4.7), Brain - Cortex (x4.6), and Brain - Caudate (basal ganglia) (x4.1).

SOURCE GeneReport for Unigene cluster for CACNA2D3-AS1 Gene:

Hs.570583
genes like me logo Genes that share expression patterns with CACNA2D3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACNA2D3-AS1 Gene

Orthologs for CACNA2D3-AS1 Gene

Evolution for CACNA2D3-AS1 Gene

ENSEMBL:
Gene Tree for CACNA2D3-AS1 (if available)
TreeFam:
Gene Tree for CACNA2D3-AS1 (if available)

No data available for Orthologs for CACNA2D3-AS1 Gene

Paralogs for CACNA2D3-AS1 Gene

No data available for Paralogs for CACNA2D3-AS1 Gene

Variants for CACNA2D3-AS1 Gene

Sequence variations from dbSNP and Humsavar for CACNA2D3-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000094088 -- 54,895,558(-) A/G intron_variant
rs1000290738 -- 54,895,259(-) A/G intron_variant
rs1000430657 -- 54,901,063(-) T/TT intron_variant
rs1000528285 -- 54,895,766(-) G/C intron_variant
rs1000642541 -- 54,885,184(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CACNA2D3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv517851 CNV gain 19592680

Additional Variant Information for CACNA2D3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACNA2D3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CACNA2D3-AS1 Gene

Disorders for CACNA2D3-AS1 Gene

Additional Disease Information for CACNA2D3-AS1

No disorders were found for CACNA2D3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CACNA2D3-AS1 Gene

Publications for CACNA2D3-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for CACNA2D3-AS1 Gene

Sources for CACNA2D3-AS1 Gene

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