Aliases for CACNA2D1-AS1 Gene

Subcategory (RNA class) for CACNA2D1-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for CACNA2D1-AS1 Gene

  • CACNA2D1 Antisense RNA 1 2 3
  • Novel Transcript 5
  • HSALNG0059245 167
  • NONHSAG048101 92
  • CACNA2D1-AS1 2
  • Lnc-CD36-11 168
  • AC006145.1 5

External Ids for CACNA2D1-AS1 Gene

Summaries for CACNA2D1-AS1 Gene

GeneCards Summary for CACNA2D1-AS1 Gene

CACNA2D1-AS1 (CACNA2D1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for CACNA2D1-AS1 Gene

Additional gene information for CACNA2D1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for CACNA2D1-AS1 Gene

Genomics for CACNA2D1-AS1 Gene

GeneHancer (GH) Regulatory Elements for CACNA2D1-AS1 Gene

Promoters and enhancers for CACNA2D1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J082015 Enhancer 0.5 Ensembl 0.4 +6.9 6924 0.6 CEBPB MAX EP300 NFIL3 HLF BCL6B FOXA1 MYC CEBPA CACNA2D1-AS1 RF00994-1011 CACNA2D1
GH07J082018 Enhancer 0.4 Ensembl 0.4 +9.0 9024 0.4 CEBPB EP300 CTCF CACNA2D1-AS1 RF00994-1011 CACNA2D1
GH07J082020 Enhancer 0.4 Ensembl 0.4 +11.1 11124 0.2 GATA3 USF1 GATA2 RF00994-1011 CACNA2D1-AS1 CACNA2D1
GH07J082029 Enhancer 0.2 Ensembl 0.4 +20.3 20324 0.2 RF00994-1011 CACNA2D1-AS1 piR-55985-187 CACNA2D1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CACNA2D1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CACNA2D1-AS1 Gene

Genomic Locations for CACNA2D1-AS1 Gene
chr7:82,009,177-82,029,955
(GRCh38/hg38)
Size:
20,779 bases
Orientation:
Plus strand

Genomic View for CACNA2D1-AS1 Gene

Genes around CACNA2D1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CACNA2D1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACNA2D1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACNA2D1-AS1 Gene

Proteins for CACNA2D1-AS1 Gene

Post-translational modifications for CACNA2D1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACNA2D1-AS1 Gene

Domains & Families for CACNA2D1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CACNA2D1-AS1 Gene

Function for CACNA2D1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACNA2D1-AS1 Gene

Localization for CACNA2D1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CACNA2D1-AS1 Gene

Pathways & Interactions for CACNA2D1-AS1 Gene

PathCards logo

SuperPathways for CACNA2D1-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for CACNA2D1-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CACNA2D1-AS1 Gene

Drugs & Compounds for CACNA2D1-AS1 Gene

No Compound Related Data Available

Transcripts for CACNA2D1-AS1 Gene

mRNA/cDNA for CACNA2D1-AS1 Gene

3 RNACentral transcripts :
2 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CACNA2D1-AS1 Gene

No ASD Table

Relevant External Links for CACNA2D1-AS1 Gene

GeneLoc Exon Structure for
CACNA2D1-AS1

Expression for CACNA2D1-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACNA2D1-AS1 Gene

Orthologs for CACNA2D1-AS1 Gene

Evolution for CACNA2D1-AS1 Gene

ENSEMBL:
Gene Tree for CACNA2D1-AS1 (if available)
TreeFam:
Gene Tree for CACNA2D1-AS1 (if available)

No data available for Orthologs for CACNA2D1-AS1 Gene

Paralogs for CACNA2D1-AS1 Gene

No data available for Paralogs for CACNA2D1-AS1 Gene

Variants for CACNA2D1-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for CACNA2D1-AS1 Gene

SNP ID Clinical significance and condition Chr 07 pos Variation AA Info Type
668817 Benign: not provided 82,011,872(+) T/C INTRON_VARIANT
rs1410751702 Likely Benign: not specified 82,012,254(+) G/A INTRON_VARIANT
rs37133 Benign: not specified; Cardiovascular phenotype; not provided 82,012,237(+) A/G SYNONYMOUS_VARIANT
rs4019047 Benign: not specified. Benign: not specified 82,012,254(+) G/GAAAG/GAAAA INTRON_VARIANT
rs560674806 Likely Benign: not specified 82,012,255(+) A/G INTRON_VARIANT

Additional dbSNP identifiers (rs#s) for CACNA2D1-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for CACNA2D1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1019753 CNV gain 25217958
nsv1026154 CNV gain 25217958

Additional Variant Information for CACNA2D1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACNA2D1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CACNA2D1-AS1 Gene

Disorders for CACNA2D1-AS1 Gene

No disorders were found for CACNA2D1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CACNA2D1-AS1 Gene

Publications for CACNA2D1-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  2. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 54

No data available for Mastermind for CACNA2D1-AS1 Gene

Products for CACNA2D1-AS1 Gene

Sources for CACNA2D1-AS1 Gene