Aliases for CACNA1G-AS1 Gene

Data sources for CACNA1G-AS1 Gene:

Subcategory (RNA class) for CACNA1G-AS1 Gene

lncRNA

Aliases for CACNA1G-AS1 Gene

External Ids for CACNA1G-AS1 Gene

Previous GeneCards Identifiers for CACNA1G-AS1 Gene

  • GC17M048635

Summaries for CACNA1G-AS1 Gene

GeneCards Summary for CACNA1G-AS1 Gene

CACNA1G-AS1 (CACNA1G Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CACNA1G-AS1 include Lung Cancer.

Additional gene information for CACNA1G-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CACNA1G-AS1 Gene

Genomics for CACNA1G-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CACNA1G-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CACNA1G-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CACNA1G-AS1 Gene

Latest Assembly
chr17:50,555,666-50,562,303
(GRCh38/hg38)
Size:
6,638 bases
Orientation:
Minus strand

Previous Assembly
chr17:48,633,568-48,639,469
(GRCh37/hg19 by Entrez Gene)
Size:
5,902 bases
Orientation:
Minus strand

chr17:48,633,568-48,639,469
(GRCh37/hg19 by Ensembl)
Size:
5,902 bases
Orientation:
Minus strand

Genomic View for CACNA1G-AS1 Gene

Genes around CACNA1G-AS1 on UCSC Golden Path with GeneCards custom track
CACNA1G-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
CACNA1G-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACNA1G-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACNA1G-AS1 Gene

Proteins for CACNA1G-AS1 Gene

Post-translational modifications for CACNA1G-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACNA1G-AS1 Gene

Domains & Families for CACNA1G-AS1 Gene

Gene Families for CACNA1G-AS1 Gene

genes like me logo Genes that share domains with CACNA1G-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CACNA1G-AS1 Gene

Function for CACNA1G-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACNA1G-AS1 Gene

Localization for CACNA1G-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CACNA1G-AS1 Gene

Pathways & Interactions for CACNA1G-AS1 Gene

PathCards logo

SuperPathways for CACNA1G-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CACNA1G-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CACNA1G-AS1 Gene

Drugs & Compounds for CACNA1G-AS1 Gene

No Compound Related Data Available

Transcripts for CACNA1G-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CACNA1G-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002F8D3F_9606 lncRNA 1435 4

Ensembl: ENST00000505793 (view in UCSC) ,

LncBook: HSALNT0242418,

LNCipedia: CACNA1G-AS1:1,

NONCODE: NONHSAT054701.2,

URS00005E0B6D_9606 lncRNA 1001 3

Ensembl: ENST00000505495 (view in UCSC) ,

LNCipedia: CACNA1G-AS1:2,

NONCODE: NONHSAT054702.2,

URS0000182E02_9606 lncRNA 368 3

Ensembl: ENST00000508920 (view in UCSC) ,

LNCipedia: CACNA1G-AS1:3,

NONCODE: NONHSAT054703.2,

URS000075C011_9606 lncRNA 1433 1

RefSeq: NR_038439,

URS00009B72B8_9606 lncRNA 1579 2

LncBook: HSALNT0242419,

NONCODE: NONHSAT176346.1,

CACNA1G-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CACNA1G-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for CACNA1G-AS1 Gene

No ASD Table

Relevant External Links for CACNA1G-AS1 Gene

GeneLoc Exon Structure for
CACNA1G-AS1

Expression for CACNA1G-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CACNA1G-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CACNA1G-AS1 Gene

This gene is overexpressed in Brain - Cerebellum (x5.5) and Cervix - Ectocervix (x4.4).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CACNA1G-AS1

SOURCE GeneReport for Unigene cluster for CACNA1G-AS1 Gene:

Hs.558704
genes like me logo Genes that share expression patterns with CACNA1G-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACNA1G-AS1 Gene

Orthologs for CACNA1G-AS1 Gene

Evolution for CACNA1G-AS1 Gene

ENSEMBL:
Gene Tree for CACNA1G-AS1 (if available)
TreeFam:
Gene Tree for CACNA1G-AS1 (if available)

No data available for Orthologs for CACNA1G-AS1 Gene

Paralogs for CACNA1G-AS1 Gene

No data available for Paralogs for CACNA1G-AS1 Gene

Variants for CACNA1G-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for CACNA1G-AS1 Gene

SNP ID Clinical significance and condition Chr 17 pos Variation AA Info Type
rs777628114 Uncertain Significance: not provided 50,561,582(-) G/C
NM_018896.5(CACNA1G):c.123G>C (p.Pro41=)
NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS
rs947131228 Uncertain Significance: not provided 50,561,536(-) C/G
NM_018896.5(CACNA1G):c.77C>G (p.Ser26Trp)
MISSENSE_VARIANT,NON_CODING_TRANSCRIPT

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for CACNA1G-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for CACNA1G-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv833477 CNV loss 17160897

Additional Variant Information for CACNA1G-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACNA1G-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CACNA1G-AS1 Gene

Disorders for CACNA1G-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CACNA1G-AS1 Gene - From: LNC and COP

Disorder Aliases PubMed IDs
lung cancer
  • lung cancer, susceptibility to
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for CACNA1G-AS1

genes like me logo Genes that share disorders with CACNA1G-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CACNA1G-AS1 Gene

Publications for CACNA1G-AS1 Gene

  1. Long non-coding RNA CACNA1G-AS1 promotes calcium channel protein expression and positively affects human keloid fibroblast migration. (PMID: 29963160) Li Y … Meng Z (Oncology letters 2018) 2 3
  2. Identification of skin-related lncRNAs as potential biomarkers that involved in Wnt pathways in keloids. (PMID: 28404955) Sun XJ … Wang B (Oncotarget 2017) 2 3
  3. LncRNA expression profiles and validation in keloid and normal skin tissue. (PMID: 26397149) Liang X … Wang X (International journal of oncology 2015) 2 3
  4. Upregulated lncRNA CACNA1G-AS1 aggravates the progression of colorectal cancer by downregulating p53. (PMID: 31957825) Wei LJ … Liu BC (European review for medical and pharmacological sciences 2020) 3
  5. LncRNA CACNA1G-AS1 facilitates hepatocellular carcinoma progression through the miR-2392/C1orf61 pathway. (PMID: 30908634) Yang J … E C (Journal of cellular physiology 2019) 3

Products for CACNA1G-AS1 Gene

Sources for CACNA1G-AS1 Gene