Aliases for CACNA1C-IT3 Gene

Subcategory (RNA class) for CACNA1C-IT3 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for CACNA1C-IT3 Gene

  • CACNA1C Intronic Transcript 3 2 3 5
  • CACNA1C-IT3 2 5 165
  • CACNA1C Intronic Transcript 3 (Non-Protein Coding) 2 3
  • NONHSAG010186.2 91
  • HSALNG0088587 164

External Ids for CACNA1C-IT3 Gene

Additional External Ids for CACNA1C-IT3 Gene

Previous GeneCards Identifiers for CACNA1C-IT3 Gene

  • GC00U933536
  • GC12P002379

Summaries for CACNA1C-IT3 Gene

GeneCards Summary for CACNA1C-IT3 Gene

CACNA1C-IT3 (CACNA1C Intronic Transcript 3) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CACNA1C-IT3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CACNA1C-IT3 Gene

Genomics for CACNA1C-IT3 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CACNA1C-IT3 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CACNA1C-IT3 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CACNA1C-IT3 Gene

Genomic Locations for CACNA1C-IT3 Gene
chr12:2,269,776-2,317,866
(GRCh38/hg38)
Size:
48,091 bases
Orientation:
Plus strand
chr12:2,378,942-2,398,103
(GRCh37/hg19)
Size:
19,162 bases
Orientation:
Plus strand

Genomic View for CACNA1C-IT3 Gene

Genes around CACNA1C-IT3 on UCSC Golden Path with GeneCards custom track
CACNA1C-IT3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
CACNA1C-IT3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACNA1C-IT3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACNA1C-IT3 Gene

Proteins for CACNA1C-IT3 Gene

Post-translational modifications for CACNA1C-IT3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACNA1C-IT3 Gene

Domains & Families for CACNA1C-IT3 Gene

Gene Families for CACNA1C-IT3 Gene

genes like me logo Genes that share domains with CACNA1C-IT3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CACNA1C-IT3 Gene

Function for CACNA1C-IT3 Gene

Phenotypes From GWAS Catalog for CACNA1C-IT3 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACNA1C-IT3 Gene

Localization for CACNA1C-IT3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CACNA1C-IT3 Gene

Pathways & Interactions for CACNA1C-IT3 Gene

PathCards logo

SuperPathways for CACNA1C-IT3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CACNA1C-IT3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CACNA1C-IT3 Gene

Drugs & Compounds for CACNA1C-IT3 Gene

No Compound Related Data Available

Transcripts for CACNA1C-IT3 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CACNA1C-IT3 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003FBA41_9606 lncRNA 622 4

Ensembl: ENST00000646990 (view in UCSC) , ENST00000542680 (view in UCSC) ,

LncBook: HSALNT0184238,

LNCipedia: CACNA1C-IT3:1,

NONCODE: NONHSAT025453.2,

URS000075B8B9_9606 lncRNA 430 4

HGNC: 41314,

RefSeq: NR_046769,

LncBook: HSALNT0184239,

LNCipedia: CACNA1C-IT3:2,

URS00009B26B3_9606 lncRNA 818 1

NONCODE: NONHSAT161733.1,

CACNA1C-IT3 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CACNA1C-IT3 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CACNA1C-IT3 Gene

No ASD Table

Relevant External Links for CACNA1C-IT3 Gene

GeneLoc Exon Structure for
CACNA1C-IT3

Expression for CACNA1C-IT3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CACNA1C-IT3 Gene

mRNA differential expression in normal tissues according to GTEx for CACNA1C-IT3 Gene

This gene is overexpressed in Testis (x45.9).

SOURCE GeneReport for Unigene cluster for CACNA1C-IT3 Gene:

Hs.653548
genes like me logo Genes that share expression patterns with CACNA1C-IT3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACNA1C-IT3 Gene

Orthologs for CACNA1C-IT3 Gene

Evolution for CACNA1C-IT3 Gene

ENSEMBL:
Gene Tree for CACNA1C-IT3 (if available)
TreeFam:
Gene Tree for CACNA1C-IT3 (if available)

No data available for Orthologs for CACNA1C-IT3 Gene

Paralogs for CACNA1C-IT3 Gene

No data available for Paralogs for CACNA1C-IT3 Gene

Variants for CACNA1C-IT3 Gene

Additional dbSNP identifiers (rs#s) for CACNA1C-IT3 Gene

Structural Variations from Database of Genomic Variants (DGV) for CACNA1C-IT3 Gene

Variant ID Type Subtype PubMed ID
nsv1040370 CNV gain 25217958
nsv509449 CNV insertion 20534489
nsv575 CNV insertion 18451855

Additional Variant Information for CACNA1C-IT3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACNA1C-IT3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CACNA1C-IT3 Gene

Disorders for CACNA1C-IT3 Gene

No disorders were found for CACNA1C-IT3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CACNA1C-IT3 Gene

Publications for CACNA1C-IT3 Gene

No publications were found for CACNA1C-IT3 Gene.

No data available for Mastermind for CACNA1C-IT3 Gene

Products for CACNA1C-IT3 Gene

Sources for CACNA1C-IT3 Gene