Aliases for CACNA1C-IT3 Gene

Subcategory (RNA class) for CACNA1C-IT3 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for CACNA1C-IT3 Gene

  • CACNA1C Intronic Transcript 3 2 3 5
  • CACNA1C Intronic Transcript 3 (Non-Protein Coding) 2 3
  • CACNA1C-IT3 2 168
  • HSALNG0088587 167
  • NONHSAG010186 92

External Ids for CACNA1C-IT3 Gene

Additional External Ids for CACNA1C-IT3 Gene

Previous GeneCards Identifiers for CACNA1C-IT3 Gene

  • GC00U933536
  • GC12P002379

Summaries for CACNA1C-IT3 Gene

GeneCards Summary for CACNA1C-IT3 Gene

CACNA1C-IT3 (CACNA1C Intronic Transcript 3) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CACNA1C-IT3 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CACNA1C-IT3 Gene

Genomics for CACNA1C-IT3 Gene

GeneHancer (GH) Regulatory Elements for CACNA1C-IT3 Gene

Promoters and enhancers for CACNA1C-IT3 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CACNA1C-IT3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CACNA1C-IT3 Gene

Genomic Locations for CACNA1C-IT3 Gene
chr12:2,269,776-2,317,866
(GRCh38/hg38)
Size:
48,091 bases
Orientation:
Plus strand
chr12:2,378,942-2,398,103
(GRCh37/hg19)
Size:
19,162 bases
Orientation:
Plus strand

Genomic View for CACNA1C-IT3 Gene

Genes around CACNA1C-IT3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CACNA1C-IT3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACNA1C-IT3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACNA1C-IT3 Gene

Proteins for CACNA1C-IT3 Gene

Post-translational modifications for CACNA1C-IT3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACNA1C-IT3 Gene

Domains & Families for CACNA1C-IT3 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CACNA1C-IT3 Gene

Function for CACNA1C-IT3 Gene

Phenotypes From GWAS Catalog for CACNA1C-IT3 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACNA1C-IT3 Gene

Localization for CACNA1C-IT3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CACNA1C-IT3 Gene

Pathways & Interactions for CACNA1C-IT3 Gene

PathCards logo

SuperPathways for CACNA1C-IT3 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for CACNA1C-IT3 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CACNA1C-IT3 Gene

Drugs & Compounds for CACNA1C-IT3 Gene

No Compound Related Data Available

Transcripts for CACNA1C-IT3 Gene

mRNA/cDNA for CACNA1C-IT3 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
2 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CACNA1C-IT3 Gene

No ASD Table

Relevant External Links for CACNA1C-IT3 Gene

GeneLoc Exon Structure for
CACNA1C-IT3

Expression for CACNA1C-IT3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CACNA1C-IT3 Gene

mRNA differential expression in normal tissues according to GTEx for CACNA1C-IT3 Gene

This gene is overexpressed in Testis (x45.9).

SOURCE GeneReport for Unigene cluster for CACNA1C-IT3 Gene:

Hs.653548
genes like me logo Genes that share expression patterns with CACNA1C-IT3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACNA1C-IT3 Gene

Orthologs for CACNA1C-IT3 Gene

Evolution for CACNA1C-IT3 Gene

ENSEMBL:
Gene Tree for CACNA1C-IT3 (if available)
TreeFam:
Gene Tree for CACNA1C-IT3 (if available)

No data available for Orthologs for CACNA1C-IT3 Gene

Paralogs for CACNA1C-IT3 Gene

No data available for Paralogs for CACNA1C-IT3 Gene

Variants for CACNA1C-IT3 Gene

Additional dbSNP identifiers (rs#s) for CACNA1C-IT3 Gene

Structural Variations from Database of Genomic Variants (DGV) for CACNA1C-IT3 Gene

Variant ID Type Subtype PubMed ID
nsv1040370 CNV gain 25217958
nsv509449 CNV insertion 20534489
nsv575 CNV insertion 18451855

Additional Variant Information for CACNA1C-IT3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACNA1C-IT3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CACNA1C-IT3 Gene

Disorders for CACNA1C-IT3 Gene

Additional Disease Information for CACNA1C-IT3

No disorders were found for CACNA1C-IT3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CACNA1C-IT3 Gene

Publications for CACNA1C-IT3 Gene

No publications were found for CACNA1C-IT3 Gene.

No data available for Mastermind for CACNA1C-IT3 Gene

Products for CACNA1C-IT3 Gene

Sources for CACNA1C-IT3 Gene