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Aliases for CACNA1C-IT3 Gene

Subcategory (RNA class) for CACNA1C-IT3 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CACNA1C-IT3 Gene

  • CACNA1C Intronic Transcript 3 2 3 5
  • CACNA1C Intronic Transcript 3 (Non-Protein Coding) 2 3

External Ids for CACNA1C-IT3 Gene

Previous GeneCards Identifiers for CACNA1C-IT3 Gene

  • GC00U933536
  • GC12P002379

Summaries for CACNA1C-IT3 Gene

GeneCards Summary for CACNA1C-IT3 Gene

CACNA1C-IT3 (CACNA1C Intronic Transcript 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CACNA1C-IT3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CACNA1C-IT3 Gene

Genomics for CACNA1C-IT3 Gene

GeneHancer (GH) Regulatory Elements for CACNA1C-IT3 Gene

Promoters and enhancers for CACNA1C-IT3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J002294 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 10.2 +25.7 25671 2.4 CEBPG SP1 ZNF600 ZIC2 CEBPA SCRT2 JUND ZBTB17 FOS ZFHX2 CACNA1C-IT3 PIR32202 CACNA1C
GH12J002263 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 7.3 -3.0 -3009 6.7 SP1 POLR2A RXRA CEBPA FOXA2 JUND FOS YY1 ZBTB33 RCOR1 CACNA1C-AS4 CACNA1C-IT3 CACNA1C PIR46918
GH12J002256 Enhancer 1.3 Ensembl ENCODE dbSUPER 7.2 -13.1 -13078 1.6 ZNF473 ZNF121 IKZF1 ZNF680 ZNF704 ZNF547 ZNF488 ZNF544 ZNF300 ZNF776 ITFG2 TULP3 DCP1B CBX3P4 IQSEC3P1 ENSG00000227081 CACNA1C-AS4 NRIP2 LINC00942 CACNA1C-IT3
GH12J002243 Enhancer 1.4 Ensembl ENCODE dbSUPER 6.1 -21.9 -21897 9.4 ZNF652 SP1 ELF3 CEBPG RERE ZNF687 TFE3 SP7 HNF1A PPARG CACNA1C-AS4 ITFG2 DCP1B CACNA1C-IT3 CACNA1C PIR46918
GH12J002282 Enhancer 0.9 ENCODE dbSUPER 8.8 +15.9 15922 6.4 CTCF RAD21 POLR2A PKNOX1 RXRB SCRT2 ZBTB20 USF1 SCRT1 SMC3 CACNA1C-AS4 CACNA1C-IT3 PIR32202 CACNA1C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CACNA1C-IT3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CACNA1C-IT3 Gene

Genomic Locations for CACNA1C-IT3 Gene
chr12:2,269,776-2,288,937
(GRCh38/hg38)
Size:
19,162 bases
Orientation:
Plus strand
chr12:2,378,942-2,398,103
(GRCh37/hg19)
Size:
19,162 bases
Orientation:
Plus strand

Genomic View for CACNA1C-IT3 Gene

Genes around CACNA1C-IT3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CACNA1C-IT3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACNA1C-IT3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACNA1C-IT3 Gene

Proteins for CACNA1C-IT3 Gene

Post-translational modifications for CACNA1C-IT3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACNA1C-IT3 Gene

Domains & Families for CACNA1C-IT3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CACNA1C-IT3 Gene

Function for CACNA1C-IT3 Gene

Phenotypes From GWAS Catalog for CACNA1C-IT3 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACNA1C-IT3 Gene

Localization for CACNA1C-IT3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CACNA1C-IT3 Gene

Pathways & Interactions for CACNA1C-IT3 Gene

PathCards logo

SuperPathways for CACNA1C-IT3 Gene

No Data Available

Interacting Proteins for CACNA1C-IT3 Gene

Gene Ontology (GO) - Biological Process for CACNA1C-IT3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CACNA1C-IT3 Gene

Drugs & Compounds for CACNA1C-IT3 Gene

No Compound Related Data Available

Transcripts for CACNA1C-IT3 Gene

mRNA/cDNA for CACNA1C-IT3 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Unigene Clusters for CACNA1C-IT3 Gene

CACNA1C intronic transcript 3 (non-protein coding):
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CACNA1C-IT3 Gene

No ASD Table

Relevant External Links for CACNA1C-IT3 Gene

GeneLoc Exon Structure for
CACNA1C-IT3
ECgene alternative splicing isoforms for
CACNA1C-IT3

Expression for CACNA1C-IT3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CACNA1C-IT3 Gene

mRNA differential expression in normal tissues according to GTEx for CACNA1C-IT3 Gene

This gene is overexpressed in Testis (x45.9).

SOURCE GeneReport for Unigene cluster for CACNA1C-IT3 Gene:

Hs.653548
genes like me logo Genes that share expression patterns with CACNA1C-IT3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACNA1C-IT3 Gene

Orthologs for CACNA1C-IT3 Gene

Evolution for CACNA1C-IT3 Gene

ENSEMBL:
Gene Tree for CACNA1C-IT3 (if available)
TreeFam:
Gene Tree for CACNA1C-IT3 (if available)

No data available for Orthologs for CACNA1C-IT3 Gene

Paralogs for CACNA1C-IT3 Gene

No data available for Paralogs for CACNA1C-IT3 Gene

Variants for CACNA1C-IT3 Gene

Sequence variations from dbSNP and Humsavar for CACNA1C-IT3 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000006012 -- 2,288,740(+) G/A non_coding_transcript_variant
rs1000152978 -- 2,282,337(+) T/C intron_variant
rs1000179221 -- 2,276,579(+) A/G intron_variant
rs1000195365 -- 2,283,366(+) C/T intron_variant
rs1000332625 -- 2,270,799(+) G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CACNA1C-IT3 Gene

Variant ID Type Subtype PubMed ID
nsv1040370 CNV gain 25217958
nsv509449 CNV insertion 20534489
nsv575 CNV insertion 18451855

Additional Variant Information for CACNA1C-IT3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACNA1C-IT3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CACNA1C-IT3 Gene

Disorders for CACNA1C-IT3 Gene

Additional Disease Information for CACNA1C-IT3

No disorders were found for CACNA1C-IT3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CACNA1C-IT3 Gene

Publications for CACNA1C-IT3 Gene

No publications were found for CACNA1C-IT3 Gene.

No data available for External Links for CACNA1C-IT3 Gene

Products for CACNA1C-IT3 Gene

Sources for CACNA1C-IT3 Gene

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