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Aliases for CACNA1C-IT3 Gene

Subcategory (RNA class) for CACNA1C-IT3 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CACNA1C-IT3 Gene

  • CACNA1C Intronic Transcript 3 2 3 5
  • CACNA1C Intronic Transcript 3 (Non-Protein Coding) 2 3

External Ids for CACNA1C-IT3 Gene

Previous GeneCards Identifiers for CACNA1C-IT3 Gene

  • GC00U933536
  • GC12P002379

Summaries for CACNA1C-IT3 Gene

GeneCards Summary for CACNA1C-IT3 Gene

CACNA1C-IT3 (CACNA1C Intronic Transcript 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CACNA1C-IT3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CACNA1C-IT3 Gene

Genomics for CACNA1C-IT3 Gene

GeneHancer (GH) Regulatory Elements for CACNA1C-IT3 Gene

Promoters and enhancers for CACNA1C-IT3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J001589 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 13.1 -676.4 -676367 7.3 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 IRF4 YY1 PIR54397 GC12M001593 FBXL14 CACNA1C-IT3 WNT5B RAD52 DCP1B
GH12J002811 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 13.1 +543.4 543361 3 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ITFG2 ENSG00000256150 DCP1B TULP3 CACNA1C-AS3 ENSG00000256691 RPS26P44 CACNA1C-IT3 NRIP2
GH12J001658 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 13.1 -608.5 -608490 5.3 PKNOX1 CLOCK MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF416 MIR3649 RAD52 ADIPOR2 DCP1B CACNA1C-AS3 CACNA1C-IT3 CACNA2D4 ENSG00000256706 LRTM2 CACNA1C
GH12J002256 Enhancer 1.1 ENCODE dbSUPER 18.5 -13.1 -13078 1.6 ZNF133 GLI4 TCF12 ZNF121 ZNF416 ZNF202 YY2 ZNF488 ZFP41 ZNF658 ITFG2 TULP3 DCP1B CBX3P4 IQSEC3P1 RPS27P3 CACNA1C-IT3 CACNA1C-AS3 CACNA1C-AS4 NRIP2
GH12J001604 Enhancer 1.5 Ensembl ENCODE dbSUPER 13.1 -664.0 -663986 2.8 MLX FEZF1 IRF4 YY1 ZNF416 ZNF143 ZNF548 ZNF263 ZNF610 NBN RAD52 DCP1B CACNA1C-IT3 WNT5B LINC00942 ENSG00000250132 ERC1 FBXL14 MIR3649
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CACNA1C-IT3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CACNA1C-IT3 Gene

Genomic Locations for CACNA1C-IT3 Gene
chr12:2,269,776-2,288,937
(GRCh38/hg38)
Size:
19,162 bases
Orientation:
Plus strand
chr12:2,378,942-2,398,103
(GRCh37/hg19)

Genomic View for CACNA1C-IT3 Gene

Genes around CACNA1C-IT3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CACNA1C-IT3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACNA1C-IT3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACNA1C-IT3 Gene

Proteins for CACNA1C-IT3 Gene

Post-translational modifications for CACNA1C-IT3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACNA1C-IT3 Gene

Domains & Families for CACNA1C-IT3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CACNA1C-IT3 Gene

Function for CACNA1C-IT3 Gene

Phenotypes From GWAS Catalog for CACNA1C-IT3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACNA1C-IT3 Gene

Localization for CACNA1C-IT3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CACNA1C-IT3 Gene

Pathways & Interactions for CACNA1C-IT3 Gene

SuperPathways for CACNA1C-IT3 Gene

No Data Available

Interacting Proteins for CACNA1C-IT3 Gene

Gene Ontology (GO) - Biological Process for CACNA1C-IT3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CACNA1C-IT3 Gene

Drugs & Compounds for CACNA1C-IT3 Gene

No Compound Related Data Available

Transcripts for CACNA1C-IT3 Gene

mRNA/cDNA for CACNA1C-IT3 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for CACNA1C-IT3 Gene

CACNA1C intronic transcript 3 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CACNA1C-IT3 Gene

No ASD Table

Relevant External Links for CACNA1C-IT3 Gene

GeneLoc Exon Structure for
CACNA1C-IT3
ECgene alternative splicing isoforms for
CACNA1C-IT3

Expression for CACNA1C-IT3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CACNA1C-IT3 Gene

mRNA differential expression in normal tissues according to GTEx for CACNA1C-IT3 Gene

This gene is overexpressed in Testis (x45.9).

SOURCE GeneReport for Unigene cluster for CACNA1C-IT3 Gene:

Hs.653548
genes like me logo Genes that share expression patterns with CACNA1C-IT3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACNA1C-IT3 Gene

Orthologs for CACNA1C-IT3 Gene

Evolution for CACNA1C-IT3 Gene

ENSEMBL:
Gene Tree for CACNA1C-IT3 (if available)
TreeFam:
Gene Tree for CACNA1C-IT3 (if available)

No data available for Orthologs for CACNA1C-IT3 Gene

Paralogs for CACNA1C-IT3 Gene

No data available for Paralogs for CACNA1C-IT3 Gene

Variants for CACNA1C-IT3 Gene

Sequence variations from dbSNP and Humsavar for CACNA1C-IT3 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000006012 -- 2,288,740(+) G/A non_coding_transcript_variant
rs1000152978 -- 2,282,337(+) T/C intron_variant
rs1000179221 -- 2,276,579(+) A/G intron_variant
rs1000195365 -- 2,283,366(+) C/T intron_variant
rs1000332625 -- 2,270,799(+) G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CACNA1C-IT3 Gene

Variant ID Type Subtype PubMed ID
nsv1040370 CNV gain 25217958
nsv509449 CNV insertion 20534489
nsv575 CNV insertion 18451855

Additional Variant Information for CACNA1C-IT3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACNA1C-IT3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CACNA1C-IT3 Gene

Disorders for CACNA1C-IT3 Gene

Additional Disease Information for CACNA1C-IT3

No disorders were found for CACNA1C-IT3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CACNA1C-IT3 Gene

Publications for CACNA1C-IT3 Gene

No publications were found for CACNA1C-IT3 Gene.

Products for CACNA1C-IT3 Gene

Sources for CACNA1C-IT3 Gene

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