Aliases for CACNA1C-IT2 Gene

Subcategory (RNA class) for CACNA1C-IT2 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for CACNA1C-IT2 Gene

  • CACNA1C Intronic Transcript 2 2 3 5
  • CACNA1C-IT2 2 5 165
  • CACNA1C Intronic Transcript 2 (Non-Protein Coding) 2 3
  • NONHSAG010183.2 91
  • HSALNG0088579 164

External Ids for CACNA1C-IT2 Gene

Additional External Ids for CACNA1C-IT2 Gene

Previous GeneCards Identifiers for CACNA1C-IT2 Gene

  • GC00U933916
  • GC12P002158

Summaries for CACNA1C-IT2 Gene

GeneCards Summary for CACNA1C-IT2 Gene

CACNA1C-IT2 (CACNA1C Intronic Transcript 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CACNA1C-IT2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CACNA1C-IT2 Gene

Genomics for CACNA1C-IT2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CACNA1C-IT2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J002051 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +9.4 9418 4.4 PRDM10 ZNF692 ZNF300 PRDM1 ZIC2 ZSCAN4 POLR2A PATZ1 ZNF501 EZH2 CACNA1C TULP3 ITFG2 LRTM2 CACNA1C-IT2 DCP1B piR-31534-100 FKBP4
GH12J002049 Enhancer 0.7 Ensembl ENCODE 0.7 +4.8 4833 2 KDM1A ZSCAN5C USF1 BHLHE40 ZMYM3 SPI1 RAD51 CACNA1C-IT2 DCP1B piR-31534-100 CACNA1C FKBP4
GH12J002057 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +12.9 12892 1.5 CTCF KDM1A ZIC2 ZSCAN4 ZNF24 REST RAD21 SCRT2 ZBTB44 SMC3 CACNA1C-IT2 piR-31534-100 DCP1B CACNA1C FKBP4
GH12J002084 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 +40.0 39969 1.2 ZNF629 SCRT2 ZBTB20 CEBPB ZBTB48 FOS ZBTB17 ZNF184 ZFP69B MAFK piR-31534-100 CACNA1C-IT2 DCP1B CACNA1C FKBP4
GH12J002053 Enhancer 0.6 CraniofacialAtlas dbSUPER 0.4 +6.9 6858 0.4 ZNF335 ZNF2 EZH2 GLIS2 CACNA1C-IT2 DCP1B piR-31534-100 CACNA1C FKBP4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CACNA1C-IT2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CACNA1C-IT2 Gene

Genomic Locations for CACNA1C-IT2 Gene
chr12:2,044,777-2,049,464
(GRCh38/hg38)
Size:
4,688 bases
Orientation:
Plus strand
chr12:2,157,518-2,158,629
(GRCh37/hg19)
Size:
1,112 bases
Orientation:
Plus strand

Genomic View for CACNA1C-IT2 Gene

Genes around CACNA1C-IT2 on UCSC Golden Path with GeneCards custom track
CACNA1C-IT2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
CACNA1C-IT2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACNA1C-IT2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACNA1C-IT2 Gene

Proteins for CACNA1C-IT2 Gene

Post-translational modifications for CACNA1C-IT2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACNA1C-IT2 Gene

Domains & Families for CACNA1C-IT2 Gene

Gene Families for CACNA1C-IT2 Gene

genes like me logo Genes that share domains with CACNA1C-IT2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CACNA1C-IT2 Gene

Function for CACNA1C-IT2 Gene

Phenotypes From GWAS Catalog for CACNA1C-IT2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACNA1C-IT2 Gene

Localization for CACNA1C-IT2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CACNA1C-IT2 Gene

Pathways & Interactions for CACNA1C-IT2 Gene

PathCards logo

SuperPathways for CACNA1C-IT2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CACNA1C-IT2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CACNA1C-IT2 Gene

Drugs & Compounds for CACNA1C-IT2 Gene

No Compound Related Data Available

Transcripts for CACNA1C-IT2 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CACNA1C-IT2 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000240FA3_9606 lncRNA 589 6

HGNC: 41313,

RefSeq: NR_046768,

Ensembl: ENST00000541871 (view in UCSC) , ENST00000646212 (view in UCSC) ,

LncBook: HSALNT0184207,

LNCipedia: CACNA1C-IT2:1,

NONCODE: NONHSAT025443.2,

URS0000D5B42A_9606 lncRNA 588 2

LncBook: HSALNT0184208,

LNCipedia: CACNA1C-IT2:2,

URS00009B25E7_9606 lncRNA 1024 1

NONCODE: NONHSAT161732.1,

CACNA1C-IT2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CACNA1C-IT2 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CACNA1C-IT2 Gene

No ASD Table

Relevant External Links for CACNA1C-IT2 Gene

GeneLoc Exon Structure for
CACNA1C-IT2

Expression for CACNA1C-IT2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CACNA1C-IT2 Gene

mRNA differential expression in normal tissues according to GTEx for CACNA1C-IT2 Gene

This gene is overexpressed in Heart - Atrial Appendage (x19.4) and Heart - Left Ventricle (x9.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CACNA1C-IT2

genes like me logo Genes that share expression patterns with CACNA1C-IT2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACNA1C-IT2 Gene

Orthologs for CACNA1C-IT2 Gene

Evolution for CACNA1C-IT2 Gene

ENSEMBL:
Gene Tree for CACNA1C-IT2 (if available)
TreeFam:
Gene Tree for CACNA1C-IT2 (if available)

No data available for Orthologs for CACNA1C-IT2 Gene

Paralogs for CACNA1C-IT2 Gene

No data available for Paralogs for CACNA1C-IT2 Gene

Variants for CACNA1C-IT2 Gene

Additional dbSNP identifiers (rs#s) for CACNA1C-IT2 Gene

Structural Variations from Database of Genomic Variants (DGV) for CACNA1C-IT2 Gene

Variant ID Type Subtype PubMed ID
esv3580037 CNV loss 25503493
esv3580294 CNV gain 25503493
nsv1040370 CNV gain 25217958
nsv521838 CNV gain 19592680
nsv826182 CNV gain 20364138
nsv826183 CNV gain 20364138

Additional Variant Information for CACNA1C-IT2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACNA1C-IT2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CACNA1C-IT2 Gene

Disorders for CACNA1C-IT2 Gene

Additional Disease Information for CACNA1C-IT2

No disorders were found for CACNA1C-IT2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CACNA1C-IT2 Gene

Publications for CACNA1C-IT2 Gene

No publications were found for CACNA1C-IT2 Gene.

No data available for Mastermind for CACNA1C-IT2 Gene

Products for CACNA1C-IT2 Gene

Sources for CACNA1C-IT2 Gene